Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2471 ATGTACGGACGCACTCAATCATTAACCATGGGCGACCAGATCGCCTCCGTCCCCGACTGTGGTGATGGCGGCGAGCCCTTGGATAATCGCCTTGTTAGATACGGAGCTCACTCTCTCGAAGAGGGTGCTGGAGTTGGCGGTATGATCGAGGATCTCAACCCTGATGCTGTTTATGCTTCCGCTGGTGATGGTTCAGACATGGCTATTCAGCGCAGCGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGCCAAGTTTATCTTTTCGACGCGGTCTCTCCTGAAAAGGTTCAAGCAGTATTATTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGTGTGGATTTGGTAAATCAGAATCAGAGGAATGCTGTGGACTTACCCGGACGCAGTAGTCAACCGCAGAGGGCGGCCTCGTTAAATCGTTTTCGGCAGAAAAGGAAGGAGCGTTGTTTTGACAAAAAAGTTCGATATGGTGTCCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGTCATGGGAATGTCTCAGAGTTAGGTCAAGATGAAAGTCCACCAGAAACTTCATGTACGAATTGTGGCATAAGTTCAATGGCGACCCCGATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCCTGTGGACTTTTTTGGGCAAACAGGGGCACTTCAAGGGATCTTTCAAAGAGAAGCCAGGACCATCCGGTGACTCCGACCAAGCAGTGTGAAAGTGATGCTGCTGCCAAGGACTTGGACTGCAGACATGGTACCCATGCACACAGCAATCTTGTTTCTTTCTCAAATGGTGATACCTCTGCGTTAATGGCTGAGCATTAG 894 49.66 MYGRTQSLTMGDQIASVPDCGDGGEPLDNRLVRYGAHSLEEGAGVGGMIEDLNPDAVYASAGDGSDMAIQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDLPGRSSQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFTSSKKPDGSYSHGNVSELGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTSRDLSKRSQDHPVTPTKQCESDAAAKDLDCRHGTHAHSNLVSFSNGDTSALMAEH 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 93259814 93269096 - Tan0021745.1 Tan02g2471 745097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2471 297 MobiDBLite consensus disorder prediction 171 204 - -
Tan02g2471 297 Pfam tify domain 73 105 IPR010399 -
Tan02g2471 297 CDD ZnF_GATA 205 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2471 297 SMART tify_2 71 106 IPR010399 -
Tan02g2471 297 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515(InterPro)
Tan02g2471 297 Pfam CCT motif 138 180 IPR010402 GO:0005515(InterPro)
Tan02g2471 297 ProSiteProfiles GATA-type zinc finger domain profile. 200 259 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2471 297 MobiDBLite consensus disorder prediction 127 142 - -
Tan02g2471 297 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2471 297 MobiDBLite consensus disorder prediction 1 20 - -
Tan02g2471 297 SMART GATA_3 200 253 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2471 297 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 254 - -
Tan02g2471 297 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Tan02g2471 297 MobiDBLite consensus disorder prediction 127 146 - -
Tan02g2471 297 PANTHER GATA TRANSCRIPTION FACTOR 28 50 290 IPR045280 GO:0006355(InterPro)
Tan02g2471 297 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2471 297 Gene3D - 196 260 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1139 Tan-Chr2:23489794 Tan02g2471 Tan-Chr2:93259814 1.70E-61 dispersed
Tan02g2471 Tan-Chr2:93259814 Tan06g0031 Tan-Chr6:550954 4.60E-51 dispersed
Tan02g2470 Tan-Chr2:93249720 Tan02g2471 Tan-Chr2:93259814 1.90E-38 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26848 PF06203 CCT 3.40E-15 CL0281 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2471 - - - 0.0