Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2471 ATGTACGGACGCACTCAATCATTAACCATGGGCGACCAGATCGCCTCCGTCCCCGACTGTGGTGATGGCGGCGAGCCCTTGGATAATCGCCTTGTTAGATACGGAGCTCACTCTCTCGAAGAGGGTGCTGGAGTTGGCGGTATGATCGAGGATCTCAACCCTGATGCTGTTTATGCTTCCGCTGGTGATGGTTCAGACATGGCTATTCAGCGCAGCGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGCCAAGTTTATCTTTTCGACGCGGTCTCTCCTGAAAAGGTTCAAGCAGTATTATTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGTGTGGATTTGGTAAATCAGAATCAGAGGAATGCTGTGGACTTACCCGGACGCAGTAGTCAACCGCAGAGGGCGGCCTCGTTAAATCGTTTTCGGCAGAAAAGGAAGGAGCGTTGTTTTGACAAAAAAGTTCGATATGGTGTCCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGTCATGGGAATGTCTCAGAGTTAGGTCAAGATGAAAGTCCACCAGAAACTTCATGTACGAATTGTGGCATAAGTTCAATGGCGACCCCGATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCCTGTGGACTTTTTTGGGCAAACAGGGGCACTTCAAGGGATCTTTCAAAGAGAAGCCAGGACCATCCGGTGACTCCGACCAAGCAGTGTGAAAGTGATGCTGCTGCCAAGGACTTGGACTGCAGACATGGTACCCATGCACACAGCAATCTTGTTTCTTTCTCAAATGGTGATACCTCTGCGTTAATGGCTGAGCATTAG 894 49.66 MYGRTQSLTMGDQIASVPDCGDGGEPLDNRLVRYGAHSLEEGAGVGGMIEDLNPDAVYASAGDGSDMAIQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDLPGRSSQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFTSSKKPDGSYSHGNVSELGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTSRDLSKRSQDHPVTPTKQCESDAAAKDLDCRHGTHAHSNLVSFSNGDTSALMAEH 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 93259814 93269096 - Tan0021745.1 Tan02g2471 745097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2471 297 MobiDBLite consensus disorder prediction 171 204 - -
Tan02g2471 297 Pfam tify domain 73 105 IPR010399 -
Tan02g2471 297 CDD ZnF_GATA 205 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2471 297 SMART tify_2 71 106 IPR010399 -
Tan02g2471 297 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515(InterPro)
Tan02g2471 297 Pfam CCT motif 138 180 IPR010402 GO:0005515(InterPro)
Tan02g2471 297 ProSiteProfiles GATA-type zinc finger domain profile. 200 259 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2471 297 MobiDBLite consensus disorder prediction 127 142 - -
Tan02g2471 297 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2471 297 MobiDBLite consensus disorder prediction 1 20 - -
Tan02g2471 297 SMART GATA_3 200 253 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2471 297 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 254 - -
Tan02g2471 297 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Tan02g2471 297 MobiDBLite consensus disorder prediction 127 146 - -
Tan02g2471 297 PANTHER GATA TRANSCRIPTION FACTOR 28 50 290 IPR045280 GO:0006355(InterPro)
Tan02g2471 297 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2471 297 Gene3D - 196 260 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2471 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1139 Tan-Chr2:23489794 Tan02g2471 Tan-Chr2:93259814 1.70E-61 dispersed
Tan02g2471 Tan-Chr2:93259814 Tan06g0031 Tan-Chr6:550954 4.60E-51 dispersed
Tan02g2470 Tan-Chr2:93249720 Tan02g2471 Tan-Chr2:93259814 1.90E-38 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g0031 . 1 230 Tify Gene Family AT3G21175 56.5 1.7e-58 223.4
Tan02g2471 . 48 297 Tify Gene Family AT4G24470 53.4 2.6e-68 256.5
Tan02g1139 . 89 297 Tify Gene Family AT4G24470 54.2 1.3e-48 191.0
Tan06g0031 . 1 288 Tify Gene Family AT1G51600 60.5 1.1e-87 320.9
Tan02g1139 . 86 287 Tify Gene Family AT1G51600 57.5 4.2e-52 202.6
Tan02g2465 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2466 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2467 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2468 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2469 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2470 . 20 175 Tify Gene Family AT1G51600 57.1 8.9e-42 168.3
Tan02g2471 . 48 297 Tify Gene Family AT4G24470 53.4 2.6e-68 256.5
Tan02g1139 . 89 297 Tify Gene Family AT4G24470 54.2 1.3e-48 191.0
Tan06g0031 . 1 288 Tify Gene Family AT1G51600 60.5 1.1e-87 320.9
Tan02g1139 . 86 287 Tify Gene Family AT1G51600 57.5 4.2e-52 202.6
Tan02g2465 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2466 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2467 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2468 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2469 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2470 . 20 175 Tify Gene Family AT1G51600 57.1 8.9e-42 168.3
Tan06g0031 . 1 230 Tify Gene Family AT3G21175 56.5 1.7e-58 223.4
Tan06g2483 . 1 180 Tify Gene Family AT4G14713 53.1 8.8e-47 184.5
Tan06g2484 . 1 180 Tify Gene Family AT4G14713 53.1 8.8e-47 184.5
Tan06g2485 . 1 180 Tify Gene Family AT4G14713 53.1 8.8e-47 184.5
Tan06g2484 . 1 260 Tify Gene Family AT4G14720 52.4 1.3e-62 237.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012239 2 1 2 0 2 0 0 1 1 0 0 0 1 1 1 1 1 2 0 1 1 0 1 0 0 1 1 5 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26848 PF06203 CCT 3.40E-15 CL0281 Tan TF