Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2479 ATGGCAAACCTCGATGTTCCGTCAGCCGCTGAGGCTACCGGAGCAACGTCGGCAGCCGGCTTCTCCGCTTCCAAGAAGCCTGAGGCCAAGGAAATTAAGCTATGGGGCGGCCGCTTCCAGGAGAGCGTCACAGACGCTGTCGAACGCTTTACAGAGTCGATTTCATATGATAAAGACCTTTACAAGCATGATATCAGCGGCAGTCGTGCTCATGCATCCATGCTCGCTAAGCAGGGATTGATGAGTATCAGTGACAGGGACAGTATTCTAGCAGGTCTCGATGAGATCGAGAGGCGTATTCGAAATGGCGAGTTCGTCTGGAGAGCTGATAGGGAAGATGTTCACATGAACATTGAAGCTGCGCTTACTGATTTGATTGGCGAACCTGCCAAGAAGCTGCATACTGCTCGGAGCCGCAACGACCAGGTTGCCACTGATTTTCGCCTGTGGTGCCGCGACGCCATCGATTCGATTGTCGAGAGGATTAAAGATTTTCAAGTTGCGATGGTAGACTTGGCAATTAAGAATGCAGGAATTATTGTTCCAGGTTATACACATTTGCAGAGAGCACAGCCCGTCCTACTTCAGCATCTTCTCCTAGCATTCGTTGAGCAGCTTGATAGGGATGCCGGCCGATTGCTGGACTGCAGAGTTAGACTGAATTTCTGCCCCTTAGGAGCTTGTGCATTGGCTGGTACTGGCCTGCCAATTGATCGATTCATGACTTCGAGCGCCTTAGGATTCTCATCTCCTTTGAGAAACAGTATTGATGCTGTTTCAGACCGAGATTTTGCAATGGAATTTCTTTCTGCCAATTCGATTACAGCCATTCATCTTTCTCGTCTGGGAGAAGAATGGGTGTTGTGGTCCTCCGAGGAGTTTGGATTCATCACACCTAATGACTCTGTTTCAACTGGAAGTAGCATAATGCCTCAGAAGAAAAATCCGGATCCAATGGAACTCGTTCGTGGAAAGTCAGCTCGAGCCATAGGTGATTTAGTAACCCTTCTAACATTGTGCAAAGGACTTCCCCTTGCATACAACCGCGATCTGCAGGAAGATAAGGAACCAGTGTTTGATAGTGTTAAGACAATTTTGGGGATGCTTGAGGTTTCAGCTGAGTTTGCTCGGAACATTAGTTTCAATCAGGATAGAATAAAGAAGGCGTTACCTGCCGGTCATCTCGATGCGACCACACTTGCGGACTATCTCGTGCATAAGGGAATACCTTTCAGAACATCTCATGATATTGTAGGCAAGTCTGTTGCAACGTGTCTAGGAAAGAACTGCCAGCTGAAGGACCTGAGTCTCGATGAACTGCGAACATTGAGTCCAATCTTCGACATGGATGTTTACGAATTTCTTGGAGTAGAAAATGCAGTTGAAAAATTTTTGTCGTATGGCTCCACGGGATCAGAATGTGTTGCTAGTCAACTCCAGTATTGGATCGAAAAACTCGGCATTGATCAGTAG 1473 47.32 MANLDVPSAAEATGATSAAGFSASKKPEAKEIKLWGGRFQESVTDAVERFTESISYDKDLYKHDISGSRAHASMLAKQGLMSISDRDSILAGLDEIERRIRNGEFVWRADREDVHMNIEAALTDLIGEPAKKLHTARSRNDQVATDFRLWCRDAIDSIVERIKDFQVAMVDLAIKNAGIIVPGYTHLQRAQPVLLQHLLLAFVEQLDRDAGRLLDCRVRLNFCPLGACALAGTGLPIDRFMTSSALGFSSPLRNSIDAVSDRDFAMEFLSANSITAIHLSRLGEEWVLWSSEEFGFITPNDSVSTGSSIMPQKKNPDPMELVRGKSARAIGDLVTLLTLCKGLPLAYNRDLQEDKEPVFDSVKTILGMLEVSAEFARNISFNQDRIKKALPAGHLDATTLADYLVHKGIPFRTSHDIVGKSVATCLGKNCQLKDLSLDELRTLSPIFDMDVYEFLGVENAVEKFLSYGSTGSECVASQLQYWIEKLGIDQ 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 93335502 93339804 + Tan0016069.1 Tan02g2479 745105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2479 490 FunFam Argininosuccinate lyase 53 153 - -
Tan02g2479 490 FunFam Argininosuccinate lyase chloroplastic 260 418 - -
Tan02g2479 490 Pfam Argininosuccinate lyase C-terminal 395 462 IPR029419 -
Tan02g2479 490 FunFam Argininosuccinate lyase 392 463 - -
Tan02g2479 490 Gene3D - 391 463 - -
Tan02g2479 490 Gene3D Fumarase/aspartase (Central domain) 150 479 - -
Tan02g2479 490 PRINTS Fumarate lyase superfamily signature 262 289 IPR000362 -
Tan02g2479 490 PRINTS Fumarate lyase superfamily signature 306 322 IPR000362 -
Tan02g2479 490 PRINTS Fumarate lyase superfamily signature 133 151 IPR000362 -
Tan02g2479 490 PRINTS Fumarate lyase superfamily signature 178 196 IPR000362 -
Tan02g2479 490 NCBIfam argininosuccinate lyase 34 481 IPR009049 GO:0004056(InterPro)|GO:0042450(InterPro)
Tan02g2479 490 Gene3D - 53 260 IPR024083 -
Tan02g2479 490 ProSitePatterns Fumarate lyases signature. 306 315 IPR020557 GO:0003824(InterPro)
Tan02g2479 490 CDD Argininosuccinate_lyase 53 486 IPR009049 GO:0004056(InterPro)|GO:0042450(InterPro)
Tan02g2479 490 SUPERFAMILY L-aspartase-like 37 486 IPR008948 GO:0003824(InterPro)
Tan02g2479 490 PANTHER ARGININOSUCCINATE LYASE 28 489 IPR009049 GO:0004056(PANTHER)|GO:0004056(InterPro)|GO:0005829(PANTHER)|GO:0042450(InterPro)|GO:0042450(PANTHER)
Tan02g2479 490 Pfam Lyase 37 331 IPR022761 -
Tan02g2479 490 Hamap Argininosuccinate lyase [argH]. 33 484 IPR009049 GO:0004056(InterPro)|GO:0042450(InterPro)
Tan02g2479 490 PRINTS Argininosuccinate lyase family signature 306 322 - -
Tan02g2479 490 PRINTS Argininosuccinate lyase family signature 224 240 - -
Tan02g2479 490 PRINTS Argininosuccinate lyase family signature 262 286 - -
Tan02g2479 490 PRINTS Argininosuccinate lyase family signature 132 154 - -
Tan02g2479 490 PRINTS Argininosuccinate lyase family signature 173 193 - -
Tan02g2479 490 PRINTS Argininosuccinate lyase family signature 341 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2479 K01755 - - csv:101213711 894.034
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3852 Tan-Chr1:103271853 Tan02g2479 Tan-Chr2:93335502 1.20E-232 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g518 . Blo12g00732 . Bda03g00456 . . Bma04g00431 Bma01g02585 . Cmo12g00155 . . . Car12g00183 Sed01g4279 . Cpe07g00171 Bhi04g01383 Tan02g2479 Cmetu03g0752 . Hepe10g0432 . Lcy13g1481 . . . . . . . . . . . Lsi04g02280 Csa03g04493 Chy04g00207 . . . Bda11g00800 . . . . . Sed05g1560 . . Cma12g00201 . . . . . Bhi09g02498 Tan01g3852 Cmetu04g3041 . Hepe01g2170 Mch11g0709 . Cla11g01425 Cam11g1480 Cec11g1510 Cco11g1506 Clacu11g1641 Cmu11g1459 Cre11g1877 . . . Cme04g00237
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002720 2 2 1 3 1 1 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 2 2 2 2 1 54