Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2481 ATGGTTCATCCTGGTTCTACCCAATTTTCTCATAAACTGGGGATTCAAAGTGTTCATGGATGCAATAAGTTACATATTAGTGGCAAGGGAAAGACCCGTCTACATCTTGTTACTATCATTCCTACATCACACGGTCTGAGGCACGATCCTGGAAGTCTTCAGCTCTTACACGGTGCAAGTCGCCCAATGTATCCTGTCTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTCTGGAATCAAGTGGTGGAGCTGGGACTGCTGTTCTAAAATCTGCCGCTGTGGTTTTGACAAGATCTTATGATGCTTTACGTGGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGATTCTATTTCTTCATGAGGCAGATGGCAGTTGGAAGAAAAGTAGTACATACTATGTTACGACTTCTTATGTTCAGCCTTTACTGCTATGGACTGGAGCTACACTGATCTGCAGGGCATTGGATCCAGTAGTTTTACCGTCAGTAGCGAGTCAGGCCGTCAAACAACGACTTCTGAATTTTGTTCGATCTTTATCTACCGTTCTGGCATTTGCCTATTGTATATCAAGCTTGATTCAACAAGTACAAAAATTCGCCACTGAATCAAATGACTCAAGTGATGCAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCTCTTTCATTGTTCATGGAGTTGCTAGGTTTTTCTACCCAGAAGTGGCTCACAGCTGGGGGTCTTGGAACTGTATTACTTACCCTTGCTGGTCGTGAGATATTTACCAACTTTCTTTCAAGTGTAATGATTCATGCAACACGACCGTTTGTGGTAAATGAATGGATTCAGACAAAGATTGATGGATATGAAGTCTCTGGAACGGTTGAGCACGTTGGTTGGTGGTCGCCGACCATTATCCGAGGAGATGATCGTGAAGCAGTCCATATTCCAAATCACAAATTCACTGTTAGTATAGTGAGAAATCTTACCCAGAAGACTCATTGGCGTATCAAGACTCATCTAGCCATCAGCCACTTAGATGTTAATAAGATTAATTATATTGTAGCTGATATGCGGAAAGTTTTGTCCAAAAATCCTCAAGTTGAACAGCAAAGGTTACACCGTAGAATTTTTTTGGACAACATCAATCCTGAAAACCAGGCTCTTATGATTATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACCTGTGTGTCAAGGAGGCAATTCTCTTGGATCTCCTCAGGGTTATTAGCCATCATAGGGCCCGGCTTGCCACTCCTATTCGCACTGTTCAGAAAATATATGGTGAGGCTGACTTGGAGAATGTACCATTTTCCGAGACCATGTATTCTCGTACGGGGGCTACTAACCGTCCTCTGCTTCTTATTGAACCATCTTATAAAGTCAATGGTGATGATAAACCCAAAGTATCTAGTCGTCCCACTCGCTCATCAAACGAAGAAAAGGATGCCAAACAAGAGGCAGTCTCGACGTCAGGAACGAAAGCCTCCGACACAGCTGGATCAATGCCAAATCTTGATATGAAAACAGATGATAAAAAATCAACTTCCCCATCTGGTACAGCGCCTAAGCCTTCAACAGGGTCGGTATCCAACACACAAACTCAGAATCTATCAACTGGTACTCCAGAACAAATCGAAAAGCCAGTAACAAGCAATGAGCTTAAAGGACTGAATTCCAAGGATAATACAGCAAGAGGAGCACCGCCCAAAAGGTCGCCCTCAGCTTCTGGTCCCGGAAGCGAGAAAGCTGATATTCCATCCTCAAGCTTGCAGAATAAGCAAGATGGAGAGAAGCCCTCTGCATCATCACCATCACCATCACCATCAGTGGCCAGGCCACCATTGGAGGAGAATATTGTCCTGGGAGTTGCCTTGGAAGGCTCAAAAAGAACACTTCCAATTGATGAAAATTTGGATCCATCTCCCTTTCATTCTCCAGCTGATTCAAAAGAAATTTCCACACAAAGGAATGGGAGTGAGTTTGCTCCAAATAGCAAGGATATGAAAGATGGCCAAATGCCTGCAGTTCCAGGTGCTACAAAAAATGATTGA 2151 43.33 MVHPGSTQFSHKLGIQSVHGCNKLHISGKGKTRLHLVTIIPTSHGLRHDPGSLQLLHGASRPMYPVSSRANVFVCRSVLESSGGAGTAVLKSAAVVLTRSYDALRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRILFLHEADGSWKKSSTYYVTTSYVQPLLLWTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCISSLIQQVQKFATESNDSSDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNINPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSETMYSRTGATNRPLLLIEPSYKVNGDDKPKVSSRPTRSSNEEKDAKQEAVSTSGTKASDTAGSMPNLDMKTDDKKSTSPSGTAPKPSTGSVSNTQTQNLSTGTPEQIEKPVTSNELKGLNSKDNTARGAPPKRSPSASGPGSEKADIPSSSLQNKQDGEKPSASSPSPSPSVARPPLEENIVLGVALEGSKRTLPIDENLDPSPFHSPADSKEISTQRNGSEFAPNSKDMKDGQMPAVPGATKND 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 93354009 93360574 + Tan0008874.1 Tan02g2481 745107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2481 716 Pfam Mechanosensitive ion channel, beta-domain 282 352 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan02g2481 716 Gene3D - 194 296 - -
Tan02g2481 716 MobiDBLite consensus disorder prediction 491 716 - -
Tan02g2481 716 MobiDBLite consensus disorder prediction 494 520 - -
Tan02g2481 716 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 703 IPR045042 -
Tan02g2481 716 MobiDBLite consensus disorder prediction 547 592 - -
Tan02g2481 716 MobiDBLite consensus disorder prediction 614 638 - -
Tan02g2481 716 MobiDBLite consensus disorder prediction 680 695 - -
Tan02g2481 716 MobiDBLite consensus disorder prediction 521 536 - -
Tan02g2481 716 Gene3D - 298 353 IPR023408 -
Tan02g2481 716 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1484 Tan-Chr1:15068504 Tan02g2481 Tan-Chr2:93354009 6.90E-197 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2481 K22047 - csv:101213477 1225.31