Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2482 ATGGCGAGAGAAAAGATAAAGATAAAGAAGATTGATAACATAACGGCGAGGCAAGTGACGTTCTCCAAGCGTCGGAGAGGGCTTTTCAAGAAGGCGGAGGAGCTGTCCGTGCTCTGTGATGCCGAAGTGGCATTGCTCATCTTCTCCGCTACTGGAAAACTCTTCGAGTTTTCCAGTTCCAGCGTTAATGATGTAATCGCAAGATATAATTTGCACTCTAGTAACCTTGGAAAGTTGGAACATCCATCCCTCGACCTGCAGCTTGAGAATACCAGTCATGTCCGGTTGGCCAAGGAAGTTGCAGATATGAGCCATCAACTAAGGCAGATGAGGGGAGAGGATCTTCAAGGATTGAACTTGGAAGATTTAAAGCAATTGGAAAAAGTGCTTGAAGTAGGACTCGCACGAGTTCTTGAAACCAAGGAAAAGAAGATTATGAGTGAAATTAATGCGCTTCAGCTTAAGGGAGCGAGGCTGATGGAAGAGAACAAGATGCTTAAACAGCAGATGATAAGGTTGTCAAATCAAAGAATGCCAGTGCTTGTAGATTCCGACGTTGTGGTGCCGGAACCGGAAGAAGGGGTTTCGTCGGAGTCCGCCGCCAATGTCTGCAGCTGCAGCAGCGGCCCTCCCGCCGATGACGACAGCTCCGACACCTCTCTCAAATTAGGCATCCAGCTGATTCATCTCTGGACTCTAATTGGCTCCATTTTCAGCAACCCAAGTGGGCCAAAAAGCTTTGACACAATCTTCGCCCTCGGCATCGGAGCTCGCTCTCTGATTTACGAATGTCAACACACTGAGTTCTCTTTCTTGGACTCGTTCGACTTCGAACTCTCAGCGATCCGCCTTCATCTCGCCATGAACACCGCCTCTGTTAAAGGCCTCGAAGTCTTCGATTTCACCGAAGAAGACGAGCTTCCCGAATTGATCTCCGAGAAGCGCCTCAGCAAATTCAAAAACCCTAATCTCGAAACCAACCCTGTTTTGAAGTATGAATTTCTTGAATGTGGGAAGGAGATTGAAAATCCACAGATGGATGTTGATTTGGATGAATGTAATCGTGGTTGTGGTGACAATGGTATTTCACATACTCCCTCGGGCACAATGAAAGAGGAATTCATCATGGAAGAAGAGAAATATCAGTTGGATGCCAATACAGATTCAGGATTGACTAGCCATTCACAAGATATGTCTGTGCAAGTAGATAATCATGTGACTGGAAGCCTTGGCTTGGAACTTGGCAAAATTGGATCTAGCTCTCAAAGTCCTACCCTGGGGTTAAATTGCACTCTTCCTGAGTTTGCTGCTGAAAGGGAGCAAGTTGATGCACTTTTAGATCCTAATAGAAGCATGAATGGGAGTTCTCCAATGAGCCCTCCGTCAGAAATTGTAGAGGATGGAGTTCTGTTGAACGGGAAGTCTTCAGATAAATGCTCATCTGATAATGAAATGGATGATTTTAACCAAGAGGTTGTTCTATGTCCCGATTATATTGTATATGGAGATCTTTACTGTGCCGGGCCTATGTTAACCTTTTCACATAATGGCATCAAAATTAATGGTTCTGTTGAATATGAAAGCAATGAGTTTAACCTCGAATGGAGAGTTGATGATCTCATTGATATTGAGTGTCAGCGGTTGCAAAGGGTTGAATCTGTGACGATCAAGCTCCATGTTATATCAAAGGATGGTGGTCAATGTGATAATGCTTGTGACACTGCTGGCATTAAGGAAGTGAAGATTGTTCTGGTTGATTCTTGCTGGTCTGAGAAACAACAAAAAATTAGATCTTTGGATTCCAGATACATGGCTATTTGGAATATGTCTCTCGACGCGGGCATAGGGACCGATGATGATGATTTAGGTGGACAGAGACATTATTTCCCCAACTTTGACGAACATTTTGAAGAAGTTGTCTATCCCAAAGGAGATCCAGATGCCGTTTCCATTAGTAAGAGGGATGTTGACTTGTTGCAACCAGAGACATTTGTCAATGATACAATCATTGACTTTTACATCCAGTATTTGAAGAGCCAGATAGACCCTAAGGAGAAGCTTAGATTTCACTTCTTCAATAGCTTTTTCTTTAGGAAGCTGGCAGACCTTGATAAAGATCCATCAAGTGCTTCTGATGGCAAAGCTGCTTTTCTTCGTGTTCGAAAATGGACTCGGAAAGTGGATCTATTTGACAAGGATTATATCTTCATTCCTATAAACTTCAACCTTCATTGGAGCTTAATGGTCATATGCCATCCTGGTGAAGTGGCTGGATATGGCGATGAAGACCTGATGAAGTCAATGAAAGTACCGTGTATACTGCATATGGATTCTATTAAAGGAAGTCATGCAGGTCTTAAAAATCTCATTCAAAGTTATTTGCTGGAAGAATGGAAAGAGAGAAACAAGGAGACATCTGAAGACATTTCAACCAAATTTAAGAACCTTAGGTTTCTCCCACTCGAGCTTCCGCAGCAGGAAAATTCATTTGATTGCGGATTATTTTTGCTCCACTATCTTGAACTCTTTCTGGCAGAAGCTCCTCTTGATTTCAGCCCGTTCAAAATCTGCAAGCTTTCAAAATTTCTTAATGTGGATTGGTTCCCACCTGCTGAGGCTTACCTCAAGCGAACTCTAATACAGAGATTAATTTTTGAAATCCTTGAAAACCGATCTCGAGAAATGTCCACAGCCGCTTGCAGTGATGAACTCCTGTCTAAATTTCCGTCAAATAATGAGGAAGAGACTGGCGTGGAGCTTCTTCCGGAAAGAGGAAGCCCAGCAGTAACACGCAATCCCAATTTGTCAAGCTCACAAGCTGTTGATGGGATTGAAATTACTCTATTAGCTGAATCTTCGAGTAGACATAACCACTTTATTGACGGTTCGGGCTTGGTTGTCAGAGAATTATTTGAACCAGGCGCCTCTAATGGATCATTACTTGGGCACTATCAATCTTTTGCTCAGACATCATCTTATTTTGATGCAAATGGTACTGTGCTGGAGGAAGATGCAGATGCAGAAACTGGAGATCGTTTCATGTACTTGCCTTCAGAACAGGATGGTTTGCAGCCCATTGATGCAATGACATCACAAGCTTGTCGTTTTCCGGGTTCATCGAGAAGCCTTGAATCTGAGGCTGCTTTTGACTTGTGCATGTCTATTCAACCAGAGGATGGCAGTGGCATTGCCTCGCCCTCATCAAGTCACTCAGATGATTTAGAAGATGTGGGAATCATTGAAAGTTGCGATGTTAGGGAAGCAAGTCCTGGTAAGAAAGGAGGAAGTAACAGAAAAAGGCCTCTACCGATTGAGAACCTGGAATCTGTAGCAGAATGCCCCACTTCTGCCGCAACGACGATGCAAGATGTCGACGCCATTGTCATTTCTCAAGATACCAACGATATTTGTGAAGACCCGAAAAATAACGGTTCTGATCCCCCGTGTAAAGAGACCGTCGTTGCATCATCGCATCTAGACGAAGATATGACAACCAAAACAGACGTTGAACATCATGATGATGCGCTGGTGGTTGCGTCGGTTACTGAGGTCGACTTACGCGAGCAGCCCCCTGCCAAGAAACCGAGGCATTTGCCATACCCCGAAGAAGCGAGCAACGCTCGCCCGACTCCGAGTTCTTCACCTTCAAAATCCAGTGTCCAACCTGTGATCTCCAAGAAACCAACAATGGAGCTCCACTACTACAGCCATCGGAACCAGTCCCAGAGAGCGGCTCTTGCTGGGGTTTTTCTTGTTCTTTTTCCTCTTTTTTACCCCAATCTCTTCGGTCCCTTGGGCCGCGCTTCGCCTTCCTTATTTTCTGAATGGATTTCCCCGAAACCGAGGCACTTGAGTCTGCTCAACAGTGCTTTACATCGGATCACGACCTCAGAAGACGAGAGAGAAATCTGGTCTCCGTTGCCAAATCAAGGATGGAAACCTTGTCTGAAGCCTACAAGAGTGGACTTATCACCGAGAAAATCTCAAGGTTACATCCAAGTGTTCTTAGATGGAGGATTGAATCAGCAAAAAATGGGGATCTGTGATGCAGTTGCTGTTGCTCGAATCCTGAATGCAACATTGATCATACCTCATCTTGAAGTCAATGCTGTTTGGAAGGATTCAAGTTCTTTTGGAGAAATTTTTGATGTGGACCACTTCATTGATATCCTGCGTGATGATATATCAATAGTCAAAGAGCTGCCTAGTGAATACTCCTGGAGCTCAAGAGAGTACTATGCTACTGGAATACGTAATACTAGAATTAAAACAGCTCCTACCCATGCTTCTGCAAGCTGGTATTTGGAAAATGTCTTGCCCATATTGCAGAGCTATGGGATTGTTGCTATTGCTCCATTCTCTCATCGTCTATCTTTCAACGACTTGCCTGTTGAGATCCAGCATTTGCGTTGTAAAGTCAACTTCAAGGCATTAGCCTTCGTTCGTGGCATTGCTGAATTAGGAGATACCATTGTCAATCGCCTTCGTTACCCTTCTAATCGAAAGGAAATAGAAGGAATTGAGAACCTGCTAGAGGATGAGACGAGAAAATCAGGTGGTGGGAAATTTGTTGTATTGCATCTTCGATTTGATAAGGATATGGCTGCTCATTCAGCTTGTGAATTTGGTGGGGGTAAAGCTGAGAGACTGGCTCTTGCAAAATATCGTCAAGTGATTTGGCAGGGACGGGTTCCTAACTCACAGTTCACTGATGAAGAGTTGAGATATCAGGGGCGTTGCCCATTGACTCCTGAAGAGATCGGATTGCTGCTAGCTGCTCTGGGGTTTACCAATAGTACCCGCGTCTATCTTGCTATACACGAGGTTTATGGTGGGGAAGCAAGGATCTCGACTTTGCGCGAATTATTTCCGCTCTTGGAAGATAAAAAGAGTCTCACCTCTCCCGTGGAACGTGCTGGTATTACAGGCAAAGCATCATTATCAGCTGCAGTTGATTATTATGTGAGCATGCACAGCGACATCTTCATTTCTGCCTCGCCTGGAAATATGCACAACGCTCTGCTGGGACATCGGGCATACGTGAACATGAAGACTATAAGACCAAACATGGTACTGTTGGGTCAGCTGTTCCTCAATAGAAGCATAGAATGGTCAGAATTCAAGAAGGCTGTTCTTGCCGGACATAAAAATAGACAAGGGCAGATCAGGTTAAGGAAAGAGAAGCAATCCATATACACTTATCCTGCTCCTGATTGCATGTGTTCTCTGTAA 5232 44.23 MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALLIFSATGKLFEFSSSSVNDVIARYNLHSSNLGKLEHPSLDLQLENTSHVRLAKEVADMSHQLRQMRGEDLQGLNLEDLKQLEKVLEVGLARVLETKEKKIMSEINALQLKGARLMEENKMLKQQMIRLSNQRMPVLVDSDVVVPEPEEGVSSESAANVCSCSSGPPADDDSSDTSLKLGIQLIHLWTLIGSIFSNPSGPKSFDTIFALGIGARSLIYECQHTEFSFLDSFDFELSAIRLHLAMNTASVKGLEVFDFTEEDELPELISEKRLSKFKNPNLETNPVLKYEFLECGKEIENPQMDVDLDECNRGCGDNGISHTPSGTMKEEFIMEEEKYQLDANTDSGLTSHSQDMSVQVDNHVTGSLGLELGKIGSSSQSPTLGLNCTLPEFAAEREQVDALLDPNRSMNGSSPMSPPSEIVEDGVLLNGKSSDKCSSDNEMDDFNQEVVLCPDYIVYGDLYCAGPMLTFSHNGIKINGSVEYESNEFNLEWRVDDLIDIECQRLQRVESVTIKLHVISKDGGQCDNACDTAGIKEVKIVLVDSCWSEKQQKIRSLDSRYMAIWNMSLDAGIGTDDDDLGGQRHYFPNFDEHFEEVVYPKGDPDAVSISKRDVDLLQPETFVNDTIIDFYIQYLKSQIDPKEKLRFHFFNSFFFRKLADLDKDPSSASDGKAAFLRVRKWTRKVDLFDKDYIFIPINFNLHWSLMVICHPGEVAGYGDEDLMKSMKVPCILHMDSIKGSHAGLKNLIQSYLLEEWKERNKETSEDISTKFKNLRFLPLELPQQENSFDCGLFLLHYLELFLAEAPLDFSPFKICKLSKFLNVDWFPPAEAYLKRTLIQRLIFEILENRSREMSTAACSDELLSKFPSNNEEETGVELLPERGSPAVTRNPNLSSSQAVDGIEITLLAESSSRHNHFIDGSGLVVRELFEPGASNGSLLGHYQSFAQTSSYFDANGTVLEEDADAETGDRFMYLPSEQDGLQPIDAMTSQACRFPGSSRSLESEAAFDLCMSIQPEDGSGIASPSSSHSDDLEDVGIIESCDVREASPGKKGGSNRKRPLPIENLESVAECPTSAATTMQDVDAIVISQDTNDICEDPKNNGSDPPCKETVVASSHLDEDMTTKTDVEHHDDALVVASVTEVDLREQPPAKKPRHLPYPEEASNARPTPSSSPSKSSVQPVISKKPTMELHYYSHRNQSQRAALAGVFLVLFPLFYPNLFGPLGRASPSLFSEWISPKPRHLSLLNSALHRITTSEDEREIWSPLPNQGWKPCLKPTRVDLSPRKSQGYIQVFLDGGLNQQKMGICDAVAVARILNATLIIPHLEVNAVWKDSSSFGEIFDVDHFIDILRDDISIVKELPSEYSWSSREYYATGIRNTRIKTAPTHASASWYLENVLPILQSYGIVAIAPFSHRLSFNDLPVEIQHLRCKVNFKALAFVRGIAELGDTIVNRLRYPSNRKEIEGIENLLEDETRKSGGGKFVVLHLRFDKDMAAHSACEFGGGKAERLALAKYRQVIWQGRVPNSQFTDEELRYQGRCPLTPEEIGLLLAALGFTNSTRVYLAIHEVYGGEARISTLRELFPLLEDKKSLTSPVERAGITGKASLSAAVDYYVSMHSDIFISASPGNMHNALLGHRAYVNMKTIRPNMVLLGQLFLNRSIEWSEFKKAVLAGHKNRQGQIRLRKEKQSIYTYPAPDCMCSL 1743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 93361392 93389315 - Tan0004813.1 Tan02g2482 745108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2482 1743 MobiDBLite consensus disorder prediction 1083 1103 - -
Tan02g2482 1743 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2482 1743 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2482 1743 CDD O-FucT_plant 1331 1686 IPR024709 -
Tan02g2482 1743 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2482 1743 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan02g2482 1743 Pfam Ulp1 protease family, C-terminal catalytic domain 664 853 IPR003653 GO:0006508(InterPro)|GO:0008234(InterPro)
Tan02g2482 1743 FunFam Transcription factor, MADS-box 13 83 - -
Tan02g2482 1743 FunFam Probable ubiquitin-like-specific protease 2B 689 820 - -
Tan02g2482 1743 Pfam K-box region 93 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan02g2482 1743 MobiDBLite consensus disorder prediction 1187 1201 - -
Tan02g2482 1743 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2482 1743 Pfam GDP-fucose protein O-fucosyltransferase 1331 1680 IPR019378 -
Tan02g2482 1743 CDD MADS_MEF2_like 12 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan02g2482 1743 Gene3D - 689 820 - -
Tan02g2482 1743 Gene3D - 13 82 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2482 1743 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED 292 1328 - -
Tan02g2482 1743 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2482 1743 Gene3D - 641 885 - -
Tan02g2482 1743 MobiDBLite consensus disorder prediction 198 218 - -
Tan02g2482 1743 Coils Coil 149 176 - -
Tan02g2482 1743 SUPERFAMILY Cysteine proteinases 641 886 IPR038765 -
Tan02g2482 1743 MobiDBLite consensus disorder prediction 1181 1223 - -
Tan02g2482 1743 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2482 1743 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2482 1743 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2482 1743 ProSiteProfiles Ubiquitin-like protease family profile. 649 843 IPR003653 GO:0006508(InterPro)|GO:0008234(InterPro)
Tan02g2482 1743 MobiDBLite consensus disorder prediction 1206 1223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0546 Tan-Chr1:5157779 Tan02g2482 Tan-Chr2:93361392 6.10E-16 dispersed
Tan02g1165 Tan-Chr2:24975489 Tan02g2482 Tan-Chr2:93361392 1.30E-42 dispersed
Tan02g2482 Tan-Chr2:93361392 Tan11g1739 Tan-Chr11:17626334 2.60E-85 dispersed
Tan10g2029 Tan-Chr10:64501965 Tan02g2482 Tan-Chr2:93361392 4.50E-27 dispersed
Tan10g2030 Tan-Chr10:64501965 Tan02g2482 Tan-Chr2:93361392 6.70E-26 dispersed
Tan03g1791 Tan-Chr3:73612629 Tan02g2482 Tan-Chr2:93361392 3.10E-220 transposed
Tan04g0154 Tan-Chr4:1152719 Tan02g2482 Tan-Chr2:93361392 1.50E-79 transposed
Tan05g2511 Tan-Chr5:76468455 Tan02g2482 Tan-Chr2:93361392 2.20E-74 transposed
Tan06g2678 Tan-Chr6:79240804 Tan02g2482 Tan-Chr2:93361392 2.50E-20 transposed
Tan02g2482 Tan-Chr2:93361392 Tan03g1763 Tan-Chr3:73460082 3.50E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26850 PF10250 O-FucT 2.70E-61 CL0113 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2482 - - - 0.0