Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2503 ATGGCTATGGCTCTTCGAAGACTCGCCGCCGGCGTTACGAAACCTAGCGTTCGTCTCGTCAATGGCCGCTTCCTCCACCACATGTCTTCTCTGTGCGGTGCCGCTGTGGAGGAAAGGGAAGTTCGAACTACATCTTCTCTGTACCGAGCCGCCGCGGAGGAAAGGGAAGCTCGAGCTCCTTGGATTAAGCAGCTGAACGCACCCATGGAAGTCGTTGCTCCGGAAGTGTACGACATCATTGAGCTTGAGAAAGCTCGTCAATACAAGGGTCTTGAACTTATACCTTCTGAGAATTTCTGCTCAACAGCAGTCATGGAAGCAGTTGGTTCAATTATGACCAATACATACAGTGAAGGATATCCAGGTGCCAGATACTATGGAGGAACTGAGAACGTTGACATTGCCGAAACCTTGTGCAAGGAACGTGCCCTAGAAGTTTTCCGTTTGGACCCTGCAAAATGGGGAGTTAACGTGCAGTCTCTTTCTGGATCCGTGGCTAACTTTCAGACATATACTGCATTATTAAAACCTCATGAGAGGATCATGTCTCTTGATTTACCACATGGTGGACATCTTTCGCATGGTTATCAGACTGATACCAAGAAGATTTCTGCTGTTTCAATGTTCTTCGAGACAATGCCATATAGGTTGGATGAGAGCACTGGTTACATTGACTATGACGGGTTGGAGAGAAGTGCATCGTTGTTTCGACCAAAACTCATTATTGCTGGAGCAAGTGCCTATTCTCGTCTCTATGATTATGCACGAATTCGAAAGATCTGTGACAAACAGAAGGCAACCATGATGGCTGACATTGCACACATTGCTGGTTTAGTTGCAGCAGACATTATTCCATCTCCTTTTGAATATGCTGATGTTGTGACAACAACCACGAATAAGTCCTTACGTGGACCACGAGGGGCCTTGATTTTCTTCCGGAAGGGCGTTAAAGAGATCAACAAAAAAGGAGAGGAAGTGCTCTATGACTATGAAGACAAAATTAATCAGGCTGTCTTTCCTGGTGTTCAAGGTGCCCCACACAATCAAAAAATAGCTGCTCTGGTGGTTGCACTAAAGCAGGCCACAACTCCGGAATACAAAGCCTTCCAACAGCAGGTTCTCACTAATTCTTCAAAATTTGCTCAGAGTTTGATGGAGAGGGGCTATGAACTTGTATCTGGTGGAACTGAGAATCATTTAGTCCTTGTGAATTTGAAAAATAAGGGTATTGATGGCTCAAGAGTGGAGAAGGTTATGGATTCGGTTCGTATGGCAGCTAACAAGAACACAGTTCCAGGGGACGTGTCTGCCGTGGTTCCTGGTGGCATCCGTATGGGAACCCCTGCTCTGACTTCGAGAGGCTTCCTCGAAGCAGATTTTGTGAGAGTAGCTGAATTCTTTGATGAAGCTACGAAGTTGGCCTTGAAGATTAAGGCTGCTGAACCCAAAGGTGCTAAGTTGAAGGATTTCGTGGCAATCATGCAATCAGATCAAGAATTCCAATCTGAAATTTCAAAGCTCCGACATGAGGTTGAGGAGTTTGCCAAGCAATTTCCAACAATAGGTTATGAGAGAGAGACAATGAGATACAGAGACTGA 1599 45.65 MAMALRRLAAGVTKPSVRLVNGRFLHHMSSLCGAAVEEREVRTTSSLYRAAAEEREARAPWIKQLNAPMEVVAPEVYDIIELEKARQYKGLELIPSENFCSTAVMEAVGSIMTNTYSEGYPGARYYGGTENVDIAETLCKERALEVFRLDPAKWGVNVQSLSGSVANFQTYTALLKPHERIMSLDLPHGGHLSHGYQTDTKKISAVSMFFETMPYRLDESTGYIDYDGLERSASLFRPKLIIAGASAYSRLYDYARIRKICDKQKATMMADIAHIAGLVAADIIPSPFEYADVVTTTTNKSLRGPRGALIFFRKGVKEINKKGEEVLYDYEDKINQAVFPGVQGAPHNQKIAALVVALKQATTPEYKAFQQQVLTNSSKFAQSLMERGYELVSGGTENHLVLVNLKNKGIDGSRVEKVMDSVRMAANKNTVPGDVSAVVPGGIRMGTPALTSRGFLEADFVRVAEFFDEATKLALKIKAAEPKGAKLKDFVAIMQSDQEFQSEISKLRHEVEEFAKQFPTIGYERETMRYRD 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 93617206 93624686 + Tan0008094.1 Tan02g2503 745129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2503 532 Gene3D Aspartate Aminotransferase, domain 1 74 519 IPR015422 -
Tan02g2503 532 CDD SHMT 72 492 IPR001085 GO:0004372(InterPro)|GO:0019264(InterPro)|GO:0030170(InterPro)|GO:0035999(InterPro)
Tan02g2503 532 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 51 525 IPR049943 GO:0004372(PANTHER)|GO:0005737(PANTHER)|GO:0006565(PANTHER)|GO:0006730(PANTHER)|GO:0008270(PANTHER)|GO:0019264(PANTHER)|GO:0030170(PANTHER)|GO:0046653(PANTHER)|GO:0046655(PANTHER)|GO:0050897(PANTHER)|GO:0070905(PANTHER)
Tan02g2503 532 Pfam Serine hydroxymethyltransferase 72 466 IPR039429 -
Tan02g2503 532 Hamap Serine hydroxymethyltransferase [glyA]. 68 522 IPR001085 GO:0004372(InterPro)|GO:0019264(InterPro)|GO:0030170(InterPro)|GO:0035999(InterPro)
Tan02g2503 532 FunFam Serine hydroxymethyltransferase 98 315 - -
Tan02g2503 532 PIRSF SHMT 48 527 IPR001085 GO:0004372(InterPro)|GO:0019264(InterPro)|GO:0030170(InterPro)|GO:0035999(InterPro)
Tan02g2503 532 Gene3D - 98 371 IPR015421 -
Tan02g2503 532 SUPERFAMILY PLP-dependent transferases 60 523 IPR015424 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2503 K00600 - - csv:101222345 863.218
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2503 Tan-Chr2:93617206 Tan03g1760 Tan-Chr3:73442185 8.60E-234 dispersed
Tan02g2502 Tan-Chr2:93591095 Tan02g2503 Tan-Chr2:93617206 8.00E-253 tandem
Tan02g2503 Tan-Chr2:93617206 Tan02g2504 Tan-Chr2:93619032 3.80E-266 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g58 . . . . . . . . . . . . . . Sed07g1476 Cpe07g00154 . Bhi04g00909 Tan02g2503 . . Hepe10g0407 . Lcy13g1458 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00180 . . . . . . . . . . . Cla08g01180 Cam08g1645 Cec08g1219 Cco08g1340 Clacu08g1340 . Cre08g1126 . Csa02g02227 . .
Vvi18g553 Blo01g01790 . . . . . . . . . . . . . Sed07g1476 . . Bhi04g00909 Tan02g2503 . . Hepe10g0407 . Lcy13g1458 Cla08g01180 Cam08g1645 Cec08g1219 Cco08g1340 Clacu08g1340 . Cre08g1126 . . . . . . . Cme03g01782 . Blo18g00098 . . . . Bma01g01367 . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01041 Csa02g02227 Chy03g01290 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000166 7 6 6 5 4 5 6 5 6 7 6 6 9 6 5 10 6 8 7 6 5 5 6 5 5 6 5 19 9 4 195