Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2508 ATGGAGCTCGACGAACACGTCTTCTTAGAGGAGTTGATGGCTCTACGAAGAGAAGCAAATTGGGACGCCATGTCAACCGAAATCACCGATCTCTGCTCAAATGCTTGGGCCTTCGATTACTGTTTCGATCAGAACACTGCCAATTTCCACCCAAATTCTTCATCGGAACCTCTCTCCGCTCAGAATCTCGACGAATTTTACCATCCTTTAGCAAACGAGTTCTCAGTTCCACAAATGGTCGATTCCGCCTATGCCGCCATGGAAGTAGCGGCGCCTCTGCCATTTCAAGCAGAGCGTCTGAATGTAGAGAGAGAAGGAGAGAGAGAAGAAGAGGAAGAGGAATTAGTTTTTCTCGCAGATGAGATTCAGAAAATGGAGGTGGTTCAAGTTCAATCGGCTTGCAAAACGGAGCCGAATCAGTCTCCAGAACTCCCCGTTTTCAACATCGGAACATGCTCTCCCGAACGAAAGAACAGACCGAAGAAATTGCAAGGCCAACCGTCGAAGAATCTCATGGCCGAGAGAAGGAGAAGGAAGCGCTTGAACGATCGCCTCTCAATGCTCAGATCCATCGTCCCTAAGATCAGCAAGATGGACCGAACTGCGATTCTGGCAGATGCAATTGAGTACATGAAAGAATTGCTGGAGAAGATCGGGAATCTGCAAAGCGAAGTGGATCGATCAAATCAGACGACGAGGAATTCATTCAACGACACAAAACCGAGCGAATTCGTAGTGAGGAATTCACCAAAATTTGAGGTGGAAAGCAGAAACGGGAACACGAGGATCGAGATTTGCTGTGCGGCGAAACCAGGATTGCTGTTATCGACGGTGAATACGATTGAAGCATTGGGGCTTGAGATTCAACAGTGTGTAATTAGCTGCTTCAATGACTTCGCATTGCAAGCCACTTGTTCCGAGGAACTGAAGCAGAGAACAGAACTGAAGCCTGAAGAATTGAAGGAAGCTTTATTTAGGAATGCAGGCTATGGAGGAAGCTGCTTGTAG 1008 47.32 MELDEHVFLEELMALRREANWDAMSTEITDLCSNAWAFDYCFDQNTANFHPNSSSEPLSAQNLDEFYHPLANEFSVPQMVDSAYAAMEVAAPLPFQAERLNVEREGEREEEEEELVFLADEIQKMEVVQVQSACKTEPNQSPELPVFNIGTCSPERKNRPKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEKIGNLQSEVDRSNQTTRNSFNDTKPSEFVVRNSPKFEVESRNGNTRIEICCAAKPGLLLSTVNTIEALGLEIQQCVISCFNDFALQATCSEELKQRTELKPEELKEALFRNAGYGGSCL 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 93674442 93677103 + Tan0014028.1 Tan02g2508 745134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2508 335 Pfam Plant bHLH transcription factor, ACT-like domain 254 324 IPR054502 -
Tan02g2508 335 Coils Coil 101 128 - -
Tan02g2508 335 CDD ACT_UUR-ACR-like 261 302 - -
Tan02g2508 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 214 IPR011598 GO:0046983(InterPro)
Tan02g2508 335 Pfam Helix-loop-helix DNA-binding domain 172 214 IPR011598 GO:0046983(InterPro)
Tan02g2508 335 Coils Coil 204 231 - -
Tan02g2508 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 230 IPR036638 GO:0046983(InterPro)
Tan02g2508 335 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 133 330 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Tan02g2508 335 Gene3D - 157 231 IPR036638 GO:0046983(InterPro)
Tan02g2508 335 SMART finulus 171 220 IPR011598 GO:0046983(InterPro)
Tan02g2508 335 MobiDBLite consensus disorder prediction 136 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3882 Tan-Chr1:103768169 Tan02g2508 Tan-Chr2:93674442 9.80E-90 dispersed
Tan01g3883 Tan-Chr1:103768169 Tan02g2508 Tan-Chr2:93674442 7.00E-51 dispersed
Tan02g2508 Tan-Chr2:93674442 Tan03g1756 Tan-Chr3:73407400 7.20E-69 dispersed
Tan07g0045 Tan-Chr7:2562406 Tan02g2508 Tan-Chr2:93674442 1.10E-34 transposed
Tan02g2508 Tan-Chr2:93674442 Tan03g1755 Tan-Chr3:73407400 8.50E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26852 PF00010 HLH 6.20E-10 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2508 - - - 0.0