Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2516 ATGGTGATGCCCGAGTCGTCTGAGGGCCACCGGGCCGCGTCTCGTCGAGCGAATCGACCGGCGACTCGGCCGCTAGTCGGAGCTAGGGTTCCGCTAAAACGGTTACTCCGCGTGGCATCTGTCGCATGTGGAATTCAATTCGGTTGGGCTTTGCAGCTCTCTCTTCTTACTCCTTATATTCAAGAGCTCGGTATTCCTCATGCTTGGTCCAGTCTCATATGGCTCTGCGGACCGCTTTCCGGCCTCTTTGTCCAGCCGCTCGTTGGCCACATGAGCGATCGCTGCACCAGCCGATACGGCCGCCGGAGGCCGTTTATTGTCGCTGGAGCGCTTTCCATAGTACTTGCCGTTCTGATTATCGGTCACTCGGCGGACCTCGGTTGGTTGATTGGTGACAGAGGTGATGTCAGGCCTCGTGCGATTGGATTCTTTGTGTTTGGATTTTGGATTCTGGACGTCGCTAACAACTTCTCACAGGGTCCTTGTAGAGCTCTGCTTGCTGATCTTACCGGTAAGGATCATCGAAGGAATCGGGTGGCAAATGCTTATTTTTCTCTATTTATCGCTATTGGTAATGTTTTTGGATATGCAACTGGATCTTTTAGTGGCTGGTACAAGATCTTGCCATTTACTCTTACCTCTGCATGTTCCGTTAATTGTGCAAATCTCAAGTCAGCTTTCTTGATTGATGTCGTGTTCATTGCAATTACAACATATTTGAGTGTATCAGCAGCTCAAGAGTTACCTCTAGATTCAAGCGACAGGTCTTCCCTCCTTGTGGAAGAAGGTATGGGGCAGTCAAGTCAAGCTTCAGAAGCATTTCTCTGGGAGTTGTTTCGGACTTTTAGACACTTCTCCGGGTATATATGGGTAATTTTGCTTGTCACTTCCCTGACATGGGTAGCATGGTTTCCATTTATTCTATTTGATACTGATTGGATGGGTAGAGAGATTTATGGTGGCAAGCCAAATGAAGGACAGAGTTATAGTTCCGGAGTCAGAATGGGAGCCTTTGGTCTGATGTTTAACTCTGTTGTCCTTGGAATAACTTCATTACTTATGGAGAAGCTGTGCAGAAAGTGGGGTGCTGGATTTGTATGGGGAATCTCTAATATTTTTATGGCTCTATGTTTCCTTGCTATCCTGGTTATTACGTATGTGGCAAACAATATGGGTTATACAGGTCATGATCTCCCACCAAATAGTATTGTATCAGCTGCATTGATTATCTTTGCTCTTCTTGGCGCCCCTTTGGCAATTACTTACAGTGTTCCATATGCCATGATCTCATCGCGTGTTGAATCTTTACAACTTGGTCAAGGTTTGTCTGTGGGTGTCTTGAACTTGGCAATAGTAATCCCACAGGTTGTGGTGTCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAACTCTCCAGCTTTTGCTGTGGCAGCACTTGCAGCCTTTGCAAGTGGACTCATTGCCATCTTGGCTCTTCCTCGGTCTAGTGCTCAGAAGCCCAGAACCCTCACATGA 1524 47.51 MVMPESSEGHRAASRRANRPATRPLVGARVPLKRLLRVASVACGIQFGWALQLSLLTPYIQELGIPHAWSSLIWLCGPLSGLFVQPLVGHMSDRCTSRYGRRRPFIVAGALSIVLAVLIIGHSADLGWLIGDRGDVRPRAIGFFVFGFWILDVANNFSQGPCRALLADLTGKDHRRNRVANAYFSLFIAIGNVFGYATGSFSGWYKILPFTLTSACSVNCANLKSAFLIDVVFIAITTYLSVSAAQELPLDSSDRSSLLVEEGMGQSSQASEAFLWELFRTFRHFSGYIWVILLVTSLTWVAWFPFILFDTDWMGREIYGGKPNEGQSYSSGVRMGAFGLMFNSVVLGITSLLMEKLCRKWGAGFVWGISNIFMALCFLAILVITYVANNMGYTGHDLPPNSIVSAALIIFALLGAPLAITYSVPYAMISSRVESLQLGQGLSVGVLNLAIVIPQVVVSLGSGPWDQLFGGGNSPAFAVAALAAFASGLIAILALPRSSAQKPRTLT 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 93776094 93781350 - Tan0006166.1 Tan02g2516 745142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2516 507 Pfam MFS/sugar transport protein 47 181 - -
Tan02g2516 507 NCBIfam sucrose/proton symporter 30 499 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Tan02g2516 507 PANTHER SUGAR TRANSPORTER 29 493 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Tan02g2516 507 FunFam Sucrose transport protein 29 495 - -
Tan02g2516 507 Gene3D MFS general substrate transporter like domains 32 495 IPR036259 -
Tan02g2516 507 CDD MFS_SLC45_SUC 35 493 - -
Tan02g2516 507 SUPERFAMILY MFS general substrate transporter 35 498 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2516 K15378 - - csv:101220384 899.042
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2896 Tan-Chr1:63089181 Tan02g2516 Tan-Chr2:93776094 1.20E-85 dispersed
Tan02g1470 Tan-Chr2:59008354 Tan02g2516 Tan-Chr2:93776094 9.80E-131 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g575 Blo01g01786 . . . Bpe02g00155 . . Bma01g02572 . Cmo12g00183 . . . Car12g00209 Sed08g1987 . Cpe07g00193 Bhi04g00897 Tan02g2516 Cmetu03g0103 . Hepe10g0399 . Lcy13g1450 Cla08g01190 Cam08g1654 Cec08g1231 Cco08g1350 Clacu08g1351 . Cre08g1137 . . . . . . . Cme03g01774 . . Bda11g00815 . . . . Bma02g00169 . . . Cma12g00228 . Car05g00514 . . . . . . . . . . . . . . . . . Lsi08g01052 Csa02g02236 Chy03g01280 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g1470 . 13 485 Sucrose Transporter Gene Family AT1G22710 64.6 1.1e-182 637.1
Tan02g1470 . 8 480 Sucrose Transporter Gene Family AT2G14670 63.4 4.0e-177 618.6
Tan02g1470 . 12 410 Sucrose Transporter Gene Family AT1G66570 62.1 4.8e-148 521.9
Tan01g2894 . 152 604 Sucrose Transporter Gene Family AT2G02860 69.5 7.2e-184 641.0
Tan01g2896 . 7 459 Sucrose Transporter Gene Family AT2G02860 69.5 7.2e-184 641.0
Tan01g2895 . 152 519 Sucrose Transporter Gene Family AT2G02860 66.0 9.8e-141 497.7
Tan02g1470 . 8 480 Sucrose Transporter Gene Family AT5G06170 61.3 1.9e-166 583.2
Tan02g1470 . 21 480 Sucrose Transporter Gene Family AT5G43610 64.7 1.4e-174 610.1
Tan02g2516 . 16 503 Sucrose Transporter Gene Family AT1G09960 69.3 1.5e-195 679.9
Tan02g1470 . 19 490 Sucrose Transporter Gene Family AT1G09960 52.4 1.4e-135 480.7
Tan02g1470 . 13 492 Sucrose Transporter Gene Family AT1G71880 61.4 4.1e-172 602.1
Tan02g1470 . 21 485 Sucrose Transporter Gene Family AT1G71890 61.1 1.1e-166 583.9
Tan02g1470 . 13 492 Sucrose Transporter Gene Family AT1G71880 61.4 4.1e-172 602.1
Tan02g1470 . 13 485 Sucrose Transporter Gene Family AT1G22710 64.6 1.1e-182 637.1
Tan01g2894 . 152 604 Sucrose Transporter Gene Family AT2G02860 69.5 7.2e-184 641.0
Tan01g2896 . 7 459 Sucrose Transporter Gene Family AT2G02860 69.5 7.2e-184 641.0
Tan01g2895 . 152 519 Sucrose Transporter Gene Family AT2G02860 66.0 9.8e-141 497.7
Tan02g2516 . 16 503 Sucrose Transporter Gene Family AT1G09960 69.3 1.5e-195 679.9
Tan02g1470 . 19 490 Sucrose Transporter Gene Family AT1G09960 52.4 1.4e-135 480.7
Tan02g1470 . 21 485 Sucrose Transporter Gene Family AT1G71890 61.1 1.1e-166 583.9
Tan02g1470 . 21 480 Sucrose Transporter Gene Family AT5G43610 64.7 1.4e-174 610.1
Tan02g1470 . 12 410 Sucrose Transporter Gene Family AT1G66570 62.1 4.8e-148 521.9
Tan02g1470 . 8 480 Sucrose Transporter Gene Family AT2G14670 63.4 4.0e-177 618.6
Tan02g1470 . 8 480 Sucrose Transporter Gene Family AT5G06170 61.3 1.9e-166 583.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010988 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 30