Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2529 ATGGAAAACCTTGATGTTTTGGAGGAAACTTTTGCTGAATCAGGCATGCTAAGTTTGGAAAGAGATATTGTGCTGCAACTAACAAAACTTGGAGCTTTGGAGTTTTTCAATACCTGTCTATCTAGAACGCTTAAAACTTCAAGTTTTCATGATTTGTCAGACTTACCCATTGAGGATGGTGGAGATCATGATGTAAACCAGAAAAATGACGGCCAGAATGATGACATCATAGTTTACTCTGGAAAAAGAGCAGGAAGAAGATCAGTAAAAAAGAGAGCAATGGATAATGCTGATAAAGTTGCTTCCCAGCCGCTAGCTACAAGAGCTGCTAAAGAAAAATTTCGTAATTTGGCTATATTTTCAAGAAAAAGAGGGTCTAATTCTAGAAAAAGAAGACTGATAGTTGCACAAAATGAAGCTGAAATGTCCACGGGGGTTAAGGTAGTTGCAAATTTAGAAAGAATTAGAGAAACTTTAGAGAAGGAATCTGGAAGAATAGCAAGCATGAGTTGCTGGGCTGATGCTGCTGGTGTTGATATAAAGGACCTGCAAAAACAGTTGCAATTTGGTTGGTTCTGCCAGGATGAACTTTTAAGGAGCACTAATTCATTAGTTCTATTCCTTGCAAAGAAATATCGATGCTCTGGGCTACCAATGGAGGACTTGGTTCAGGCAGGAGCCCTTGGTGTTCTGCAAGGGGTGGGAAGGTTTGACCCTAAAAGGGGTTTTAGATTCTCAACCTATATCCAGTACTGGATAAGGAAATCAATGTCAAGAGTTGTGGCACGAAATTCGAGGGGAATTCAAATTCCATGGTCATTAACCAAGGTAATAAATCAGATTCAGAAAGCTCGAAAGGCCTTGAACAACGGTAGTAGGCGATATTCAGATGACGATATAGCAAAGGCTACTGGTCTTCCTTTGGCCAAGGTTAGAGTTGCTAGCAACTGTTTAAAAGTTGTGGGATCGGTTGATCAGAAGATGGATGATGGACTAAATATGAAATATATGGAGTTTACAGCAGATACGTCAATACAGAGCCCAGAAGAGACAGTGAAGCGAAAACTAATGAAGAAAGACATCTTTAATCTCCTTGAAGGGTTGGAATCAAGGGAGAGGCAGGTCCTGGTGCTGCGTTATGGACTTATGGATTTCCAACCCAAGTCGCTCGAGGAAATTGGAAAACTTCTGCACGTAAGCAAGGAGTGGGTTCGAAAAATAGAAAAGAAAGCCATGACAAAGCTGAAAAATGAAGAGACTGTGAGGAACTTGAGCCATTATTTAGATTGA 1290 40.39 MENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGGDHDVNQKNDGQNDDIIVYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKVINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 93890918 93895681 + Tan0009333.2 Tan02g2529 745155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2529 429 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 1 428 IPR050239 -
Tan02g2529 429 Pfam Sigma-70, region 4 364 416 IPR007630 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Tan02g2529 429 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 131 266 IPR013325 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Tan02g2529 429 Gene3D - 269 420 - -
Tan02g2529 429 Gene3D - 79 266 - -
Tan02g2529 429 Pfam Sigma-70 region 2 199 266 IPR007627 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Tan02g2529 429 Pfam Sigma-70 region 3 277 351 IPR007624 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Tan02g2529 429 PRINTS Major sigma-70 factor signature 389 404 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Tan02g2529 429 PRINTS Major sigma-70 factor signature 404 415 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Tan02g2529 429 PRINTS Major sigma-70 factor signature 221 234 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Tan02g2529 429 PRINTS Major sigma-70 factor signature 245 253 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Tan02g2529 429 PRINTS Major sigma-70 factor signature 368 380 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Tan02g2529 429 CDD Sigma70_r4 358 416 - -
Tan02g2529 429 NCBIfam sigma-70 family RNA polymerase sigma factor 195 417 IPR014284 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Tan02g2529 429 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 328 418 IPR013324 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2529 K03093 - - csv:101206167 723.391
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2529 Tan-Chr2:93890918 Tan02g2531 Tan-Chr2:93890918 7.70E-241 dispersed
Tan02g2528 Tan-Chr2:93890918 Tan02g2529 Tan-Chr2:93890918 7.70E-241 tandem
Tan02g2529 Tan-Chr2:93890918 Tan02g2530 Tan-Chr2:93890918 7.70E-241 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g42 . . . . . . . . . . . . . Car12g00215 Sed01g1245 Cpe07g00198 . Bhi04g00884 Tan02g2529 . . Hepe10g0389 . Lcy13g1443 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01198 Cam08g1660 Cec08g1237 Cco08g1356 Clacu08g1357 . Cre08g1144 . Csa02g02242 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007971 0 2 1 0 0 1 2 1 1 1 1 1 2 1 1 0 1 2 2 1 1 1 1 1 1 0 1 3 5 1 36