Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan02g2541 | ATGTTAACTGCAAGAGTCCATGGAATCTATACTTACATTTTTCCAATTGCTTTTCTGTACTTCTCTTGTAAAGACCAAACCCATCTGAAAACACATCAGAACCATCCAAAAATGTCAAGAATTTCACTGTCATTTCTTAGAACTCTGCTCTCTCTTAACCTCTTCTACTTCATCTCCATACCATTCTGTGTAGGTTCACAAACTGTCAATGAAGACCAGGCCATCTTGCTTGAGATTAAACAACAATGGGGGAATCCACCGTCTCTCCGGTTGTGGAACTCCTCATCCTCGCCCTGCGATTGGCCTGATATCGTCTGTAGAGACGGCACGGTCACGGGAATCTCTCTCAGAAACAAGAATATCACTGGGAAAATCCCAAGTGTCATCTGTAACCTGCAAAATCTCACTATGCTTGATCTTTCATGGAACTACATCCCTGGTGAGTTCCCTGAAGTTCTGTACAACTGTTCCAAGCTCAAGGTTCTTGATCTTTCAGGAAACTATTTTGTGGGCTCGATACCACACGACATAGATCGATTTCAAACTCTGCAGTACATGGACCTTAGTGCCAACAACTTCTCAGGCAATTTTCCAGCAGCACTAGGCCGGTTGCCAGATTTGAGAACTTTGAACATTTATCGAACTCAATGCAATGGCACATTGCCAGTTGAAATTGGCAACTTGTCCAATCTTGAAACTCTGAGCTTGGCGTATAACACCTTGCTGATCCCATCGCCAATACCACAAGATTTCAGGAAACTGAAGAAGTTAAAGTATATGTGGATGACCAAATCCAACTTGATTGGTGAAATCCCAGAAAGCTTATCGGATCTTTTGAGCCTTGAGCACTTGGATTTATCCAGCAACAACTTGGTAGGCTCTGTTCCTGCTGGGCTGTTCTCTTTGCAGAATTTAAGCAACTTATATCTCTACCAAAATCAATTGTCTGGTGAGATACCCAAATCAATCCAAGCATCAAATTTACTAAATGTTGACCTCTCTACAAACAATTTAAGCGGCACAATCCCTGAAGATTTTGGGAAGTTACAGAAGTTGCAGGTCCTCAACTTGTTTGCAAATCACTTGTCTGGTGAGATTCCAGGGAGTTTAGGCCTAATACCGATGCTGAAAGGTTTTCGTGTTTTCAACAACAGCTTAACCGGGGACCTGCCACAAGAATTGGGTCTGCATTCAAATCTAGAAGCATTGGAAGTTTCAATGAATAAACTAAGTGGTTTGCTACCTGAACATCTCTGTAAAAATGGTGTCTTACAGGGAGTAGTTGCTTTCTCCAACCATCTTAGCGGTGAATTGCCAAAAGGGCTTGGCAATTGCAGGACCCTACGCACAATCCAGCTTTCTAATAACAACTTTTCTGGCGAAATACCTCCTGGTCTTTGGACTACTTTTAATCTGTCAAGCATAATATTAGATGGAAACTCATTTAGAGGCAAGTTACCAGATAGTTTATCTTGGAATCTCTCTCGATTGGCAATAAATAACAACAAATTTTGGGGTCAAATTCCTCAAAATGTGTCTGCTTGGCGAAACTTGATTGTGTTTGAGGCAAGCAACAATCAGCTTTCTGGTAAATTTCCCGAGGGATTGACAAGGCTTCCTCGTCTTACCACACTTATATTGAGCGGAAATCAACTTTCTGGCCAACTTCCTTCAACAATTGGTTCATGGGAATCATTGAATACTCTAAATCTCTCAGGAAATTTACTTTCAGGCCATATTCCAGCAGCGTTTGGTTTTCTTCCTAATCTCCTTTACCTGGATTTATCAACTAATAACTTCTCAGGTGAAATCCCACCTGAAATTGGCCAGTTAAGACTGGCTTCCCTCAACTTGTCTTCGAATCAGCTTTCAGGGAAAATCCCAGACGAGTACGAGAATATAGCATACGAAAGGAGTTTCTTGGACAACCCCAATCTATGTACCACCACTGATGTACTTGACCTTCCAAGCTGTAACTCCAGACAAAGAGATTCAAAAGATCAGTCCTCTAAATTTCTTCCTTTCATTCTAGCTCTCATTGTCACCTTGCTCATAATCGCTTTACTATGGATCTCCATCCTATATAGAAGTTACTGCAAAAAGGATGAAAGTTGCCACCCTGACACTTGGAAGCTAACTTCATTCCAGAGATTAGACTTCACAGAAGCGAATATCTTATCAAACTTGACAGAAACTAATCTGATAGGAAGCGGTGGATCCGGCAAGGTGTACTGCATAGATATCAACCATGCTGGTTACTATGTTGCTGTCAAAAGGATTTGGAGTAACAAGAAGTTGGATCAAAAGCTTGAGAAAGAATTTCAAGCAGAAGTTCAAATACTAGGCTCAATTCGGCATGCAAACATAGTGAAGTTGCTCTGCTGCGTCTGGAATGAGAATTCAAAGCTCTTAGTCTATGAATACATGCAAAATCAGAGCCTAGATAAGTGGCTTCATAAAAGGAAGAAAAGGTTGAGAGCGGCTACAATGGATTTTGTTGAACAATATGTCTTAGACTGGCCAAGGAGGTTGCAGATTGCTATCGGAGCTGCACAAGGCCTCAGTTATATGCACCATGATTGCTCTCCACCAATCATTCATCGAGACGTTAAGTCGAGCAACATCTTATTAGACCGCGAGTTCCAGGCAAGGATAGCAGATTTTGGGCTGGCCAAGATGCTGGCCAGGCAGGGAGAGCCTCACACTATGTCTGCAATAGCAGGATCTTTTGGCTACATAGCCCCAGAGTATGCCTATACAACGAAAGTCAGTGAAAAGATTGATGTCTATAGCTTCGGGGTTGTACTCTTGGAACTCACAACAGGAAGAGAACCTAACTGTGGAAATGAGCACACAAGCCTAGCAGAATGGGCATGGCAGCAATATAGTGAGGGAAAGCCTATTGCTGATGCTCTTGATGAAGAAATCAGAAACCCATGCAATATGGAAGAGATGACTACTCTGTTCAAACTTGGTCTAATTTGTACGAGCACATTACCTGAAATACGACCTTCGATGAAGGAGGTTCTGCATATCCTACGCCAATGCAGCCCTCCAGAAGATTGTGATAGGAGAAAGAATGCCAGTGAATTTGATGTTGTTCCCCTCCTTGGCACTCCTATATGA | 3126 | 42.13 | MLTARVHGIYTYIFPIAFLYFSCKDQTHLKTHQNHPKMSRISLSFLRTLLSLNLFYFISIPFCVGSQTVNEDQAILLEIKQQWGNPPSLRLWNSSSSPCDWPDIVCRDGTVTGISLRNKNITGKIPSVICNLQNLTMLDLSWNYIPGEFPEVLYNCSKLKVLDLSGNYFVGSIPHDIDRFQTLQYMDLSANNFSGNFPAALGRLPDLRTLNIYRTQCNGTLPVEIGNLSNLETLSLAYNTLLIPSPIPQDFRKLKKLKYMWMTKSNLIGEIPESLSDLLSLEHLDLSSNNLVGSVPAGLFSLQNLSNLYLYQNQLSGEIPKSIQASNLLNVDLSTNNLSGTIPEDFGKLQKLQVLNLFANHLSGEIPGSLGLIPMLKGFRVFNNSLTGDLPQELGLHSNLEALEVSMNKLSGLLPEHLCKNGVLQGVVAFSNHLSGELPKGLGNCRTLRTIQLSNNNFSGEIPPGLWTTFNLSSIILDGNSFRGKLPDSLSWNLSRLAINNNKFWGQIPQNVSAWRNLIVFEASNNQLSGKFPEGLTRLPRLTTLILSGNQLSGQLPSTIGSWESLNTLNLSGNLLSGHIPAAFGFLPNLLYLDLSTNNFSGEIPPEIGQLRLASLNLSSNQLSGKIPDEYENIAYERSFLDNPNLCTTTDVLDLPSCNSRQRDSKDQSSKFLPFILALIVTLLIIALLWISILYRSYCKKDESCHPDTWKLTSFQRLDFTEANILSNLTETNLIGSGGSGKVYCIDINHAGYYVAVKRIWSNKKLDQKLEKEFQAEVQILGSIRHANIVKLLCCVWNENSKLLVYEYMQNQSLDKWLHKRKKRLRAATMDFVEQYVLDWPRRLQIAIGAAQGLSYMHHDCSPPIIHRDVKSSNILLDREFQARIADFGLAKMLARQGEPHTMSAIAGSFGYIAPEYAYTTKVSEKIDVYSFGVVLLELTTGREPNCGNEHTSLAEWAWQQYSEGKPIADALDEEIRNPCNMEEMTTLFKLGLICTSTLPEIRPSMKEVLHILRQCSPPEDCDRRKNASEFDVVPLLGTPI | 1041 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 93939053 | 93943041 | - | Tan0016337.1 | Tan02g2541 | 745167 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan02g2541 | 1041 | Gene3D | Ribonuclease Inhibitor | 397 | 667 | IPR032675 | - | |
| Tan02g2541 | 1041 | ProSitePatterns | Protein kinases ATP-binding region signature. | 735 | 758 | IPR017441 | GO:0005524(InterPro) | |
| Tan02g2541 | 1041 | FunFam | Leucine-rich repeat receptor-like protein kinase PXL1 | 324 | 418 | - | - | |
| Tan02g2541 | 1041 | Gene3D | Transferase(Phosphotransferase) domain 1 | 809 | 1034 | - | - | |
| Tan02g2541 | 1041 | Pfam | Leucine rich repeat N-terminal domain | 70 | 106 | IPR013210 | - | |
| Tan02g2541 | 1041 | Pfam | Leucine Rich Repeat | 351 | 371 | IPR001611 | GO:0005515(InterPro) | |
| Tan02g2541 | 1041 | Pfam | Leucine Rich Repeat | 280 | 302 | IPR001611 | GO:0005515(InterPro) | |
| Tan02g2541 | 1041 | Pfam | Leucine Rich Repeat | 448 | 467 | IPR001611 | GO:0005515(InterPro) | |
| Tan02g2541 | 1041 | Pfam | Leucine Rich Repeat | 327 | 349 | IPR001611 | GO:0005515(InterPro) | |
| Tan02g2541 | 1041 | Pfam | Leucine Rich Repeat | 565 | 587 | IPR001611 | GO:0005515(InterPro) | |
| Tan02g2541 | 1041 | Pfam | Leucine Rich Repeat | 589 | 611 | IPR001611 | GO:0005515(InterPro) | |
| Tan02g2541 | 1041 | Pfam | Leucine Rich Repeat | 304 | 324 | IPR001611 | GO:0005515(InterPro) | |
| Tan02g2541 | 1041 | Pfam | Leucine Rich Repeat | 613 | 632 | IPR001611 | GO:0005515(InterPro) | |
| Tan02g2541 | 1041 | Pfam | Leucine Rich Repeat | 541 | 562 | IPR001611 | GO:0005515(InterPro) | |
| Tan02g2541 | 1041 | Gene3D | Ribonuclease Inhibitor | 245 | 384 | IPR032675 | - | |
| Tan02g2541 | 1041 | FunFam | LRR receptor-like serine/threonine-protein kinase GSO1 | 422 | 662 | - | - | |
| Tan02g2541 | 1041 | FunFam | Putative leucine-rich repeat receptor-like protein kinase family protein | 224 | 323 | - | - | |
| Tan02g2541 | 1041 | SMART | serkin_6 | 729 | 1012 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Tan02g2541 | 1041 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 865 | 877 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Tan02g2541 | 1041 | FunFam | Receptor-like protein kinase HSL1 | 709 | 808 | - | - | |
| Tan02g2541 | 1041 | Gene3D | Ribonuclease Inhibitor | 68 | 244 | IPR032675 | - | |
| Tan02g2541 | 1041 | SUPERFAMILY | L domain-like | 78 | 434 | - | - | |
| Tan02g2541 | 1041 | SUPERFAMILY | RNI-like | 326 | 633 | - | - | |
| Tan02g2541 | 1041 | CDD | STKc_IRAK | 735 | 1013 | - | - | |
| Tan02g2541 | 1041 | Pfam | Protein kinase domain | 731 | 1011 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Tan02g2541 | 1041 | FunFam | Receptor-like protein kinase HSL1 isoform A | 69 | 219 | - | - | |
| Tan02g2541 | 1041 | PANTHER | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED | 61 | 1016 | IPR050647 | - | |
| Tan02g2541 | 1041 | SUPERFAMILY | Protein kinase-like (PK-like) | 718 | 1013 | IPR011009 | - | |
| Tan02g2541 | 1041 | ProSiteProfiles | Protein kinase domain profile. | 729 | 1014 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Tan02g2541 | 1041 | FunFam | Kinase family with leucine-rich repeat domain-containing protein | 809 | 1030 | - | - | |
| Tan02g2541 | 1041 | Pfam | Leucine rich repeat | 134 | 193 | IPR001611 | GO:0005515(InterPro) | |
| Tan02g2541 | 1041 | Gene3D | Phosphorylase Kinase; domain 1 | 698 | 808 | - | - | |
| Tan02g2541 | 1041 | SMART | LRR_typ_2 | 349 | 372 | IPR003591 | - | |
| Tan02g2541 | 1041 | SMART | LRR_typ_2 | 539 | 563 | IPR003591 | - | |
| Tan02g2541 | 1041 | SMART | LRR_typ_2 | 228 | 253 | IPR003591 | - | |
| Tan02g2541 | 1041 | SMART | LRR_typ_2 | 132 | 156 | IPR003591 | - | |
| Tan02g2541 | 1041 | SMART | LRR_typ_2 | 278 | 302 | IPR003591 | - | |
| Tan02g2541 | 1041 | SMART | LRR_typ_2 | 587 | 611 | IPR003591 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan02g2541 | Tan-Chr2:93939053 | Tan09g1209 | Tan-Chr9:64412203 | 5.10E-129 | dispersed | |
| Tan02g2541 | Tan-Chr2:93939053 | Tan01g1453 | Tan-Chr1:14636184 | 1.10E-83 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 67252 | PF00069 | Pkinase | 8.30E-46 | CL0016 | Tan | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan02g2541 | - | - | - | 0.0 |