Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2543 ATGGACTTGAGCCTTTTGCAACGTCAAGTTGCCTACACGAAGAGATGTTTTTTTGAACAGGGCTATCTTGATCGTGATCAATTCACTCAGCTTGAAGAATTGCAAGATGATGCAAACCCAAATTTTGCTGAAGAAATCGTGTCATTATTCTACAATGATTCAGCCAGACTCATCCGCAGCATTGAACAAACTATGGCCAGTAAGCCTACGGATTTTGAAAAGCTTGACAACTACATGCACCAGTTCAAGGGCAGTAGCTCAAGCATTGGAGCCAATAGGGTGACAGAAGCATGTTCGCAGTTCAGAGAATACTGCTTGGCAGGAAATCTTGAAGGATGTATAAGGAGTTTCCAGCAAGTCAAACAAGAGCATGAAACTCTGAAGAAGAAGCTTGATACCTATTTCCAGCTGGCTAGAGAAGCTGGGAAAGGTTGA 435 42.76 MDLSLLQRQVAYTKRCFFEQGYLDRDQFTQLEELQDDANPNFAEEIVSLFYNDSARLIRSIEQTMASKPTDFEKLDNYMHQFKGSSSSIGANRVTEACSQFREYCLAGNLEGCIRSFQQVKQEHETLKKKLDTYFQLAREAGKG 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 93949025 93954135 - Tan0007420.2 Tan02g2543 745169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2543 144 Gene3D HPT domain 1 143 IPR036641 GO:0000160(InterPro)
Tan02g2543 144 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 19 139 IPR036641 GO:0000160(InterPro)
Tan02g2543 144 PANTHER PHOSPHORELAY INTERMEDIATE PROTEIN YPD1 6 139 IPR045871 GO:0000160(InterPro)|GO:0000160(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0009736(PANTHER)|GO:0009927(InterPro)|GO:0009927(PANTHER)|GO:0016310(PANTHER)|GO:0043424(PANTHER)|GO:0043424(InterPro)
Tan02g2543 144 FunFam Histidine-containing phosphotransfer protein 4 1 144 - -
Tan02g2543 144 Pfam Hpt domain 45 128 IPR008207 GO:0000160(InterPro)
Tan02g2543 144 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 39 134 IPR008207 GO:0000160(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2543 K14490 - - csv:101219195 270.781
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2543 Tan-Chr2:93949025 Tan06g0241 Tan-Chr6:1988420 4.80E-46 dispersed
Tan02g2542 Tan-Chr2:93949025 Tan02g2543 Tan-Chr2:93949025 2.80E-78 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g10 . . . . . . . . . . . . . . Sed02g1237 Cpe07g00202 . Bhi04g00872 Tan02g2543 Cmetu02g0241 . . . . . . . . . . . . . . . . . . . . . . Bda13g01323 . . . Bma02g00080 . . . . Cma12g00238 . . . . . . . . . . . Cla08g01206 Cam08g1667 Cec08g1245 Cco08g1363 Clacu08g1365 . Cre08g1150 . Csa02g02251 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001289 2 6 0 1 2 1 3 1 1 1 2 1 3 3 3 4 1 3 3 1 3 2 2 3 2 3 3 7 5 3 75