Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2548 ATGGAAGCTCCCGAATATTTCCAGAAGAATAATGCCTACTGCTCCCAATTCCCTTCCCACTCCTCCGACAACGGAGCCGGTGAGCATTTCATCGTCGAGGAACTTCTCGATTTCTCTAACGACGATGACGCTGTCATTGCCGACGGCGGTGGATTCTTCAATAATTCCAACTGCTTCCTGAATGGAAATTCGGCTGAATCCTCCGCCGTCACCGTCGTTGACAGTTCCAATTCCTCCTCGTTTTCCGGTTGCGAACCCAATTCCTTTTTGGAGGACATTAGTGGCTCTAATTTAGCCGACACCCATTTCTCCGACGAACTCTGCATTCCGTACGACGATTTAGCTGAGTTGGAATGGCTTTCAAATTTCGTAGAGGAACCATTTTCCAGCGAGGACATGCAAAAGTTAGAACTCATCTCTGGGGTCAAAGTCAAACCCGAAAAACCCGTCCAATCCCGACAACCCACTGCCACCGCCACCGCTACCGCCGCCGTCTCCTCCTCCACTACCCACGGCCGAAACGCCGCCGCAATCTTCAAACCCGACATCGTTTCGGTTCCGGCGAAGGCCCGTAGCAAACGCTCACGCGCCGTTCCATCCAATTGGAACAACTCCCGCCTCCTCCCACTCTCTCCGACCAGCTCCTCGTCGGAATCCGACATCGCCGCCGCCGACGGACCACCGCACCCTGTCAAGAAAGTCCCTCCAAAGGTGGCGGCGGTGAAGAAGAAGGACTCCCCGGAGGCCGGAGTGTCGGCCGGAGAGGGGCGGAAGTGCATGCACTGCGCCACTGACAAGACGCCGCAGTGGCGGACTGGCCCAATGGGCCCAAAGACGCTCTGTAACGCTTGCGGCGTCCGGTACAAATCCGGCCGCCTGGTGCCGGAGTACCGCCCCGCCGCGAGCCCCACCTTCGTCCTTACCAAACACTCCAATTCCCACCGGAAAGTGTTGGAGCTCCGGCGGCAGAAGGAGATGCTCAGAGCCCAACAACAGCAATTGCTTTTGGATCATCATCATCATCATCAGAATATGATCTTTGATTCATCCAACGGTGACGATTATCTCATCAAGCAAAACGTGGCACACGATTACCGACAGCTGATCTGA 1110 55.59 MEAPEYFQKNNAYCSQFPSHSSDNGAGEHFIVEELLDFSNDDDAVIADGGGFFNNSNCFLNGNSAESSAVTVVDSSNSSSFSGCEPNSFLEDISGSNLADTHFSDELCIPYDDLAELEWLSNFVEEPFSSEDMQKLELISGVKVKPEKPVQSRQPTATATATAAVSSSTTHGRNAAAIFKPDIVSVPAKARSKRSRAVPSNWNNSRLLPLSPTSSSSESDIAAADGPPHPVKKVPPKVAAVKKKDSPEAGVSAGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMLRAQQQQLLLDHHHHHQNMIFDSSNGDDYLIKQNVAHDYRQLI 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 94013848 94016489 - Tan0000256.1 Tan02g2548 745174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2548 369 MobiDBLite consensus disorder prediction 190 254 - -
Tan02g2548 369 MobiDBLite consensus disorder prediction 147 172 - -
Tan02g2548 369 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 255 317 - -
Tan02g2548 369 SMART GATA_3 253 303 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2548 369 ProSiteProfiles GATA-type zinc finger domain profile. 253 289 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2548 369 Coils Coil 317 337 - -
Tan02g2548 369 CDD ZnF_GATA 258 305 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2548 369 MobiDBLite consensus disorder prediction 196 221 - -
Tan02g2548 369 Gene3D - 253 303 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Tan02g2548 369 PIRSF Txn_fac_GATA_plant 13 349 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Tan02g2548 369 ProSitePatterns GATA-type zinc finger domain. 259 284 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2548 369 FunFam GATA transcription factor 250 334 - -
Tan02g2548 369 PANTHER GATA TRANSCRIPTION FACTOR 29 325 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Tan02g2548 369 MobiDBLite consensus disorder prediction 151 172 - -
Tan02g2548 369 Pfam GATA zinc finger 259 293 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2548 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2548 Tan-Chr2:94013848 Tan06g0259 Tan-Chr6:2097840 4.50E-56 dispersed
Tan02g2548 Tan-Chr2:94013848 Tan01g3930 Tan-Chr1:104188423 3.30E-75 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g2340 . 6 262 C2C2-Gata Transcription Factor Family AT3G24050 51.3 5.4e-54 208.8
Tan02g2548 . 76 369 C2C2-Gata Transcription Factor Family AT5G25830 52.6 7.9e-68 255.0
Tan01g3930 . 39 345 C2C2-Gata Transcription Factor Family AT5G25830 50.9 9.6e-66 248.1
Tan04g2676 . 96 271 C2C2-Gata Transcription Factor Family AT3G60530 50.5 4.4e-44 175.6
Tan01g1282 . 69 379 C2C2-Gata Transcription Factor Family AT5G66320 50.3 1.1e-67 254.6
Tan01g1282 . 105 379 C2C2-Gata Transcription Factor Family AT3G51080 52.3 5.0e-56 215.7
Tan03g2048 . 103 273 C2C2-Gata Transcription Factor Family AT4G36240 51.4 6.5e-40 161.8
Tan07g1894 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.7 8.0e-136 481.5
Tan01g2093 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.1 1.0e-135 481.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26855 PF00320 GATA 1.90E-15 CL0167 Tan TF