Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2548 ATGGAAGCTCCCGAATATTTCCAGAAGAATAATGCCTACTGCTCCCAATTCCCTTCCCACTCCTCCGACAACGGAGCCGGTGAGCATTTCATCGTCGAGGAACTTCTCGATTTCTCTAACGACGATGACGCTGTCATTGCCGACGGCGGTGGATTCTTCAATAATTCCAACTGCTTCCTGAATGGAAATTCGGCTGAATCCTCCGCCGTCACCGTCGTTGACAGTTCCAATTCCTCCTCGTTTTCCGGTTGCGAACCCAATTCCTTTTTGGAGGACATTAGTGGCTCTAATTTAGCCGACACCCATTTCTCCGACGAACTCTGCATTCCGTACGACGATTTAGCTGAGTTGGAATGGCTTTCAAATTTCGTAGAGGAACCATTTTCCAGCGAGGACATGCAAAAGTTAGAACTCATCTCTGGGGTCAAAGTCAAACCCGAAAAACCCGTCCAATCCCGACAACCCACTGCCACCGCCACCGCTACCGCCGCCGTCTCCTCCTCCACTACCCACGGCCGAAACGCCGCCGCAATCTTCAAACCCGACATCGTTTCGGTTCCGGCGAAGGCCCGTAGCAAACGCTCACGCGCCGTTCCATCCAATTGGAACAACTCCCGCCTCCTCCCACTCTCTCCGACCAGCTCCTCGTCGGAATCCGACATCGCCGCCGCCGACGGACCACCGCACCCTGTCAAGAAAGTCCCTCCAAAGGTGGCGGCGGTGAAGAAGAAGGACTCCCCGGAGGCCGGAGTGTCGGCCGGAGAGGGGCGGAAGTGCATGCACTGCGCCACTGACAAGACGCCGCAGTGGCGGACTGGCCCAATGGGCCCAAAGACGCTCTGTAACGCTTGCGGCGTCCGGTACAAATCCGGCCGCCTGGTGCCGGAGTACCGCCCCGCCGCGAGCCCCACCTTCGTCCTTACCAAACACTCCAATTCCCACCGGAAAGTGTTGGAGCTCCGGCGGCAGAAGGAGATGCTCAGAGCCCAACAACAGCAATTGCTTTTGGATCATCATCATCATCATCAGAATATGATCTTTGATTCATCCAACGGTGACGATTATCTCATCAAGCAAAACGTGGCACACGATTACCGACAGCTGATCTGA 1110 55.59 MEAPEYFQKNNAYCSQFPSHSSDNGAGEHFIVEELLDFSNDDDAVIADGGGFFNNSNCFLNGNSAESSAVTVVDSSNSSSFSGCEPNSFLEDISGSNLADTHFSDELCIPYDDLAELEWLSNFVEEPFSSEDMQKLELISGVKVKPEKPVQSRQPTATATATAAVSSSTTHGRNAAAIFKPDIVSVPAKARSKRSRAVPSNWNNSRLLPLSPTSSSSESDIAAADGPPHPVKKVPPKVAAVKKKDSPEAGVSAGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMLRAQQQQLLLDHHHHHQNMIFDSSNGDDYLIKQNVAHDYRQLI 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 94013848 94016489 - Tan0000256.1 Tan02g2548 745174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2548 369 MobiDBLite consensus disorder prediction 190 254 - -
Tan02g2548 369 MobiDBLite consensus disorder prediction 147 172 - -
Tan02g2548 369 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 255 317 - -
Tan02g2548 369 SMART GATA_3 253 303 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2548 369 ProSiteProfiles GATA-type zinc finger domain profile. 253 289 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2548 369 Coils Coil 317 337 - -
Tan02g2548 369 CDD ZnF_GATA 258 305 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2548 369 MobiDBLite consensus disorder prediction 196 221 - -
Tan02g2548 369 Gene3D - 253 303 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Tan02g2548 369 PIRSF Txn_fac_GATA_plant 13 349 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Tan02g2548 369 ProSitePatterns GATA-type zinc finger domain. 259 284 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2548 369 FunFam GATA transcription factor 250 334 - -
Tan02g2548 369 PANTHER GATA TRANSCRIPTION FACTOR 29 325 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Tan02g2548 369 MobiDBLite consensus disorder prediction 151 172 - -
Tan02g2548 369 Pfam GATA zinc finger 259 293 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2548 Tan-Chr2:94013848 Tan06g0259 Tan-Chr6:2097840 4.50E-56 dispersed
Tan02g2548 Tan-Chr2:94013848 Tan01g3930 Tan-Chr1:104188423 3.30E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26855 PF00320 GATA 1.90E-15 CL0167 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2548 - - - 0.0