Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2561 ATGAGCTCTAACTCTGACTCTAACTCTAACGATCTTCTTCTTCGTCCTCAAAGCTCAGAAACAGAGACCGAACCAGCAAAGAAAATCAAACGCATCAGAAACCCAGAATCCAGTTCAAATTCGAATTCCAGCAAACACCCAGTTTACAGAGGCGTTCGAATGAGAAATTGGGGAAAATGGGTTTCTGAAATCCGAGAGCCTCGTAAGAAATCCCGCATTTGGTTGGGAACTTTCCCCTGCCCTGAAATGGCCGCCCGTGCTCACGACGTCGCCGCCCTCAGCATCAAAGGTAACTCCGCCATCCTTAATTTCCCCGACCTCGTCCACCTCCTTCCTCGCCCTGTCTCCCTCGCCCCTCGCGATGTTCAGGCCGCCGCCGCCAAAGCCGCCCATATGCACAATTTCCCTTCTTCTACTAATACCAAGAATATTATTAATCATTCCCCCACCGCCACCGCCACCGCCACCCCCGCCGATGACTCCGACGAGCTCACCGAGATCGTTCAGCTCCCCAGTCTCGGAACCACTTACGACGACTGCCGTGACTCCTTCGTTTTCCTTGACTCGCCCGATGAATCTTCCGGCTGGTTTAATTACCCGCCGCCGTGGCTACAGAGCTTGCACGATTATGAGGATGAAATTGAAAACGACGCTCTTTTGCTTTTTCTTCAAAGGGCTTGA 681 52.13 MSSNSDSNSNDLLLRPQSSETETEPAKKIKRIRNPESSSNSNSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPCPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDVQAAAAKAAHMHNFPSSTNTKNIINHSPTATATATPADDSDELTEIVQLPSLGTTYDDCRDSFVFLDSPDESSGWFNYPPPWLQSLHDYEDEIENDALLLFLQRA 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 94197080 94197947 - Tan0017560.1 Tan02g2561 745187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2561 226 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g2561 226 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g2561 226 MobiDBLite consensus disorder prediction 137 159 - -
Tan02g2561 226 SUPERFAMILY DNA-binding domain 48 106 IPR016177 GO:0003677(InterPro)
Tan02g2561 226 CDD AP2 49 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g2561 226 MobiDBLite consensus disorder prediction 1 20 - -
Tan02g2561 226 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g2561 226 MobiDBLite consensus disorder prediction 1 49 - -
Tan02g2561 226 Pfam AP2 domain 47 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g2561 226 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g2561 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 33 184 IPR051032 -
Tan02g2561 226 SMART rav1_2 48 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g2561 226 FunFam Ethylene-responsive transcription factor 2 47 106 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3934 Tan-Chr1:104234861 Tan02g2561 Tan-Chr2:94197080 1.80E-52 dispersed
Tan02g2561 Tan-Chr2:94197080 Tan09g1224 Tan-Chr9:64693612 2.40E-44 dispersed
Tan02g2561 Tan-Chr2:94197080 Tan06g0265 Tan-Chr6:2144087 4.40E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26856 PF00847 AP2 8.80E-14 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2561 K09286 - csv:101206242 247.669