Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan02g2561 | ATGAGCTCTAACTCTGACTCTAACTCTAACGATCTTCTTCTTCGTCCTCAAAGCTCAGAAACAGAGACCGAACCAGCAAAGAAAATCAAACGCATCAGAAACCCAGAATCCAGTTCAAATTCGAATTCCAGCAAACACCCAGTTTACAGAGGCGTTCGAATGAGAAATTGGGGAAAATGGGTTTCTGAAATCCGAGAGCCTCGTAAGAAATCCCGCATTTGGTTGGGAACTTTCCCCTGCCCTGAAATGGCCGCCCGTGCTCACGACGTCGCCGCCCTCAGCATCAAAGGTAACTCCGCCATCCTTAATTTCCCCGACCTCGTCCACCTCCTTCCTCGCCCTGTCTCCCTCGCCCCTCGCGATGTTCAGGCCGCCGCCGCCAAAGCCGCCCATATGCACAATTTCCCTTCTTCTACTAATACCAAGAATATTATTAATCATTCCCCCACCGCCACCGCCACCGCCACCCCCGCCGATGACTCCGACGAGCTCACCGAGATCGTTCAGCTCCCCAGTCTCGGAACCACTTACGACGACTGCCGTGACTCCTTCGTTTTCCTTGACTCGCCCGATGAATCTTCCGGCTGGTTTAATTACCCGCCGCCGTGGCTACAGAGCTTGCACGATTATGAGGATGAAATTGAAAACGACGCTCTTTTGCTTTTTCTTCAAAGGGCTTGA | 681 | 52.13 | MSSNSDSNSNDLLLRPQSSETETEPAKKIKRIRNPESSSNSNSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPCPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDVQAAAAKAAHMHNFPSSTNTKNIINHSPTATATATPADDSDELTEIVQLPSLGTTYDDCRDSFVFLDSPDESSGWFNYPPPWLQSLHDYEDEIENDALLLFLQRA | 226 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 94197080 | 94197947 | - | Tan0017560.1 | Tan02g2561 | 745187 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan02g2561 | 226 | PRINTS | Ethylene responsive element binding protein signature | 71 | 87 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan02g2561 | 226 | PRINTS | Ethylene responsive element binding protein signature | 49 | 60 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan02g2561 | 226 | MobiDBLite | consensus disorder prediction | 137 | 159 | - | - | |
Tan02g2561 | 226 | SUPERFAMILY | DNA-binding domain | 48 | 106 | IPR016177 | GO:0003677(InterPro) | |
Tan02g2561 | 226 | CDD | AP2 | 49 | 107 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan02g2561 | 226 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Tan02g2561 | 226 | Gene3D | AP2/ERF domain | 48 | 106 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan02g2561 | 226 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
Tan02g2561 | 226 | Pfam | AP2 domain | 47 | 97 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan02g2561 | 226 | ProSiteProfiles | AP2/ERF domain profile. | 48 | 105 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan02g2561 | 226 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 33 | 184 | IPR051032 | - | |
Tan02g2561 | 226 | SMART | rav1_2 | 48 | 111 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan02g2561 | 226 | FunFam | Ethylene-responsive transcription factor 2 | 47 | 106 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g3934 | Tan-Chr1:104234861 | Tan02g2561 | Tan-Chr2:94197080 | 1.80E-52 | dispersed | |
Tan02g2561 | Tan-Chr2:94197080 | Tan09g1224 | Tan-Chr9:64693612 | 2.40E-44 | dispersed | |
Tan02g2561 | Tan-Chr2:94197080 | Tan06g0265 | Tan-Chr6:2144087 | 4.40E-38 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26856 | PF00847 | AP2 | 8.80E-14 | CL0081 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan02g2561 | K09286 | - | csv:101206242 | 247.669 |