Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2655 ATGAGCCGGCCAACTACCCGAAGTAAGAACAAAAGGCATAAACAAGAGGACAATGTCGATAACAGTTCCGACATATTGAGGAAAATTCACTCATCTGGGGCAATAACCAAGGATGACATCAATCAGCTCTATATGATTTGGAAGCCGATTTGTCAAGGATGCCGGCTGAATACTAAGGATAACCCAAATTGTTTCTGTGGGCTGATTCCACCTCCTACAGGTAGCCGGAAGGTTGGCTTATGGCAAAAGATGTCAGAAATTGTGCAAGCTCTTGGTTCGGATCCTTCCAAGGATCAACGTACTTCTCCTGACTTTCCTGCTGGTCTTACAAATCTTGGTGCAACATGCTATGCTAATAGCATCCTTCAGTGTCTGTACATGAACAAGTGCTTCAGGGAAGGCATATTTTCTGTTGAGTCAGATGTGTTGAAACAAAATCCAGTTTTAGATCAGCTTGTACGGCTATTTGCTCTCCTGCATGCCAGTAAAATGGCTTTTGTGGATTCATTCCCTTTTATAAAAACACTGGAGTTAGATAATGGAGTTCAGCAGGATAGTCATGAGTTCCTGACATTGCTTCTTTCTCTGCTCGAGCGTTGCTTGAGTCACTCAAAAGTTTCTAAAGCAAAGACTATTGTTCAAGATCTTTTCCGTGGAAGTGTGTCTCATGTAACTACGTGCTCACAGTGCGGAAAAGATTCAGAAGCCTCTTCCAAAATGGAGGACTTCTATGAGTTGGAGTTGAATGTTCTGGGCTTGAAAAGTTTAGATGAAAGTTTAGATGATTATCTTAGTGTGGAAGAGCTTCATGGTGATAATCAATATTTTTGTGAGTCATGTAAATCCAGAGTTAATGCTACTCGCAGTATCAAGCTACGTACATTGCCCCCTGTTCTAAATTTTCAGCTTAAGCGATGTGTTTTTCTTCCCAAGACTACAACAAAGAAGAAAATCACATCTGCACTTTCTTTTCCTGGAGTGTTAGACATGCGGGAAAGGCTAGCCGAGTCTTCGCAGTCTGAATCAATATATGACTTGTCGGCAGTTCTGATTCACAAAGGAACCACTGTCAACAGTGGCCATTACATAGCTCACATCAAGGATGAAAATACAGGGCAGTGGTGGGAATTTGATGACGAAAATGTCTCAAAATTAGGTCATCGTCCATTTGGAGAAAAATCATCAAATGCCAATTCTAAATCTGTTAGAACTGAGTCAGCCGTTCCATTGGTTTCCAAGGAAGAAGTAAATGTTACCGCTGAAGGGAATCCAACGAATGGGGTTCTTCAGCAATCAACAGAATCTGGTATTGGTTGTCCTACTGATATCTTTTCATCTAATGATGCCTACATGCTGATGTATAATTTAAGGTGCTCAGGGAAGGAGAACACAAATAGAGATACTAGCTGTAATGTTAATAGTAAAGATGTAGAAGGTAACATGGTTCCTTTCAAGGATGGCTTGTCACTTCCATCACATCTGTGTGATGAGATAAGTAGTTTAAATGAATCATATGTTATAGCTTGCCGAGAATATGAATCAAAGAAGGAAGTTGAACTGGGTTGTATCAATGATCGGAGACAGGAGGTCCGATCGATTTTGTCTGAAGCCCCTGTTCACTCGCTTGAGGAACCCTTTTGTTGGATTTCCATAGATTGGCTTCGCCAGTGGGCTGATAAGGTCTCCCCACCCATTCTTGACAATTCTCCTATACAGTGTTTGCATGGAAAAGTTCCAATATCAAAGGTAACTTGCATAAAGAGATTGTCCATCAAGGCTTGGGACAAGCTATTCTCCAAGCATGGTGGGGGCCCCAAATTGACCAACGAAGATATCTGTATGGATTGCCTTATTACTGGTGCTCGAAATGTAGTTTGTGCTGACAGCTACAGGGACCGAAGAATATCAATGAAAGAAATTGCGTTAACTGCACTTTCGGGCAATTATCCAGATGGAACATATTTTGTTTCTAGGACATGGTTGCAACAGTGGGTTAAAAGGAAAATTCTTGATGCTCCTTCTGAAGCTGATGCAGAACCCACAGCCCCAATAAGGTGTCCTCATGGGCAACTTTTTCCAGAGCAAGCTGCTGGAGCTAAGCGAGTTCTGGTTCCAGAAGATCTCTGGCTTTTCTTACATGAAGATGCTATTGCTGTAAAACCTGATGATCCTACAGGGGTTCCAACTTTTCCCTCGGATGCAAGACAATGTTCTCTGTGCAGTGATGAATTATCTGAAGTGGCAGTCATGGAAGATTCTATAAGAGGAGTGAAGCTTAAACAGCGACAAAATCACGAAAGATTAGCTGTTGGAAAATTTATTCCACTTTCTCTGCATTGCAAATATTATTTGGTGCCTACATCGTGGCTTTCAAAGTGGAGGAACTACATTAATGCAAGTGGAAAGAGTGCTTCATTTGTAGAGAAGCCGGAAAATTTGGATGGGGTGATTAATATTCTGAGGTGTGAAAAGCATTCACGCCTCCTTGAAAGACCTCCTGACCTGATCTGCAAACGTGGTACAGTGCAGCAGAAGTCCCCTGCAGATGTTTTAACAATCATTTCAGAGAACGATTGGAAATGCTTCTGTGAAGAGTGGGAAGGTAGCGAGGCATGCGGCATTTCTGCTGTGATTGAGTCAAGTAGTTGTGTAGGGAATGACATGGACGGGTTCTCCAAAGAGAAGACCATGGCGGAAGAGCATCTCTGTTCCAATGATGAAGTTAACAATGGGGATTTTGAACAACTTCTACTTAAGACTGATCCCGAGATATGTGAAGAATGTATAGGAGAACGAGAAAGCTGCGAGCTAATGCAGAAACTAAATTATACTGGGGAGGATATTTGTGTGTACTTTGCCCGTGGGAAGGAAGCTCCCAAATCAATTTTGGAAGCTTCTGAGTCCACTTTCGATCCAGATCGCCGAATCTCAAAGCGTGCAAGGAAGACAAATTCAGGGAATTTTGTTAATCTAAAAGTTTCTGGTTCGACTTCAGTGTACCAGCTAAAAATGATGATATGGGAATGTTTTGGGGTTGTGAAAGAAAACCAGATTCTTCGCAAAGGTAATAGGATAATTGATGGAGAAACTGATACTCTGGCAGACAAGAATATATTTCCTGGGGACAAACTATGGGTAATGGATTCTGAGATTCATGAGCATCGAGATATTGCTGATGAGCTTTCTGATCACAAAATGAACATGCAACATACTGAGGAAGGATTTCGTGGAACGCTTTTGGCTGCTAATGTTTCATCTGAAGTTGTTTAA 3270 41.71 MSRPTTRSKNKRHKQEDNVDNSSDILRKIHSSGAITKDDINQLYMIWKPICQGCRLNTKDNPNCFCGLIPPPTGSRKVGLWQKMSEIVQALGSDPSKDQRTSPDFPAGLTNLGATCYANSILQCLYMNKCFREGIFSVESDVLKQNPVLDQLVRLFALLHASKMAFVDSFPFIKTLELDNGVQQDSHEFLTLLLSLLERCLSHSKVSKAKTIVQDLFRGSVSHVTTCSQCGKDSEASSKMEDFYELELNVLGLKSLDESLDDYLSVEELHGDNQYFCESCKSRVNATRSIKLRTLPPVLNFQLKRCVFLPKTTTKKKITSALSFPGVLDMRERLAESSQSESIYDLSAVLIHKGTTVNSGHYIAHIKDENTGQWWEFDDENVSKLGHRPFGEKSSNANSKSVRTESAVPLVSKEEVNVTAEGNPTNGVLQQSTESGIGCPTDIFSSNDAYMLMYNLRCSGKENTNRDTSCNVNSKDVEGNMVPFKDGLSLPSHLCDEISSLNESYVIACREYESKKEVELGCINDRRQEVRSILSEAPVHSLEEPFCWISIDWLRQWADKVSPPILDNSPIQCLHGKVPISKVTCIKRLSIKAWDKLFSKHGGGPKLTNEDICMDCLITGARNVVCADSYRDRRISMKEIALTALSGNYPDGTYFVSRTWLQQWVKRKILDAPSEADAEPTAPIRCPHGQLFPEQAAGAKRVLVPEDLWLFLHEDAIAVKPDDPTGVPTFPSDARQCSLCSDELSEVAVMEDSIRGVKLKQRQNHERLAVGKFIPLSLHCKYYLVPTSWLSKWRNYINASGKSASFVEKPENLDGVINILRCEKHSRLLERPPDLICKRGTVQQKSPADVLTIISENDWKCFCEEWEGSEACGISAVIESSSCVGNDMDGFSKEKTMAEEHLCSNDEVNNGDFEQLLLKTDPEICEECIGERESCELMQKLNYTGEDICVYFARGKEAPKSILEASESTFDPDRRISKRARKTNSGNFVNLKVSGSTSVYQLKMMIWECFGVVKENQILRKGNRIIDGETDTLADKNIFPGDKLWVMDSEIHEHRDIADELSDHKMNMQHTEEGFRGTLLAANVSSEVV 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 94907428 94920313 + Tan0022012.3 Tan02g2655 745281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2655 1089 CDD Peptidase_C19L 108 454 IPR033841 GO:0004843(InterPro)
Tan02g2655 1089 SUPERFAMILY DUSP-like 529 612 IPR035927 -
Tan02g2655 1089 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 415 IPR028889 -
Tan02g2655 1089 FunFam Ubiquitin carboxyl-terminal hydrolase 26 512 610 - -
Tan02g2655 1089 SUPERFAMILY Cysteine proteinases 104 454 IPR038765 -
Tan02g2655 1089 MobiDBLite consensus disorder prediction 10 24 - -
Tan02g2655 1089 MobiDBLite consensus disorder prediction 392 406 - -
Tan02g2655 1089 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843(InterPro)
Tan02g2655 1089 ProSiteProfiles DUSP domain profile. 627 735 IPR006615 GO:0004843(InterPro)
Tan02g2655 1089 ProSiteProfiles DUSP domain profile. 521 613 IPR006615 GO:0004843(InterPro)
Tan02g2655 1089 CDD Ubl_USP48 981 1080 IPR044743 GO:0004197(InterPro)|GO:0004843(InterPro)|GO:0016579(InterPro)
Tan02g2655 1089 MobiDBLite consensus disorder prediction 387 408 - -
Tan02g2655 1089 FunFam ubiquitin carboxyl-terminal hydrolase 48 94 457 - -
Tan02g2655 1089 SUPERFAMILY Ubiquitin-like 982 1053 IPR029071 -
Tan02g2655 1089 SMART dusp 539 615 IPR006615 GO:0004843(InterPro)
Tan02g2655 1089 Gene3D Cysteine proteinases 88 457 - -
Tan02g2655 1089 Pfam Ubiquitin carboxyl-terminal hydrolase 107 454 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Tan02g2655 1089 MobiDBLite consensus disorder prediction 1 25 - -
Tan02g2655 1089 ProSiteProfiles DUSP domain profile. 756 878 IPR006615 GO:0004843(InterPro)
Tan02g2655 1089 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 88 470 IPR050164 GO:0004843(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0016579(PANTHER)
Tan02g2655 1089 Gene3D - 752 874 IPR035927 -
Tan02g2655 1089 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 108 123 IPR018200 GO:0004843(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2655 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2653 Tan-Chr2:94907428 Tan02g2655 Tan-Chr2:94907428 0.00E+00 dispersed
Tan02g2655 Tan-Chr2:94907428 Tan02g2657 Tan-Chr2:94907428 0.00E+00 dispersed
Tan02g2654 Tan-Chr2:94907428 Tan02g2655 Tan-Chr2:94907428 0.00E+00 tandem
Tan02g2655 Tan-Chr2:94907428 Tan02g2656 Tan-Chr2:94907428 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g269 . . . Bda03g00459 . . . . Cmo05g00665 . . . . . Sed01g1313 . . Bhi04g01060 Tan02g2655 Cmetu03g1138 . . . . . . . . . . . . . . . Lsi04g02276 . . Cme03g01678 . . . Bda13g01355 . Bpe04g00420 . . . . . . . . Car05g00581 Cpe11g00560 . . . . . . . . Cla08g01169 Cam08g1632 Cec08g1206 Cco08g1329 Clacu08g1330 . Cre08g1114 . . Chy03g01302 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005534 1 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 5 1 40