Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2666 ATGGCTGTCAAAACAGCACAATCATTTAGAGATAGGACGCAGGAATTCCAGAACATAACAGAGAGGCTAAAGAAGTCTTTCTCATCTGGCACGGGAACAACGGGACCAAGTGGTGGTTCAAATTCAGAAGAGCAGCACTCTGCTGTGGCTCTGCAGTCTGAATTTAATAAGAGGGCATCCAAGATTGGGCTAGGGATACACCAGACGTCTCAGAAACTCTCGAAGTTGGCAAAATTGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATTCAGGAGCTAACTGCACTTATTAAGCAGGACATTACAACATTGAACTCTGCAGTTGTAGATCTTCAGCTTCACTGCAACTCTAGAAATGAAAGTGGAAATATGTCCAGTGATACTACGAGTCATTCAACCACTGTGGTAGATGATCTTAAGAATCGACTGATGAGCACCACAAAAGAATTTAAAGAAGTCCTAACCATGCGAACAGAAAATTTGAAGGTTCATGAGAACAGAAGACAACTATTTTCTTCTAATGCTACAAAGGAATCTACAAACCCTTTTGTGCGCCAACGCCCATTAGCTTCCAGGTCAGCTGCTGGTGGTGCCTCAAGCGCACCCCCTCCTCCATGGGCCAAGGCGTCTACATCTTTTTCCAAAACATCCCCCGGCAAGCAGGTGGATGGGGAGAGTCAACCATTGTTACAGCAGCAACAGCAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCAGAAGCTTTACAAAATGTAGAATCCACCATCCATGAATTGAGCAATATCTTCAACCAACTGGCAACTCTGGTTTCTGAACAAGGAGAGATTGCGATCAGGATCGACGAGAACATGGACGATACACTGGCAAATGTGGAGGGGGCACAGGGAGCTTTGCTCAAGTATCTAAACAGTATATCATCCAATAGGTGGTTGATGATCAAAATTTTCTTTGTACTAATATTCTTCCTTATGGTTTTCTTATTTTTTGTGGCATAG 1014 43.39 MAVKTAQSFRDRTQEFQNITERLKKSFSSGTGTTGPSGGSNSEEQHSAVALQSEFNKRASKIGLGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTALIKQDITTLNSAVVDLQLHCNSRNESGNMSSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSNATKESTNPFVRQRPLASRSAAGGASSAPPPPWAKASTSFSKTSPGKQVDGESQPLLQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 94990584 94997429 + Tan0021481.1 Tan02g2666 745292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2666 337 MobiDBLite consensus disorder prediction 170 190 - -
Tan02g2666 337 MobiDBLite consensus disorder prediction 208 234 - -
Tan02g2666 337 CDD SNARE_syntaxin5 248 326 - -
Tan02g2666 337 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 25 IPR021538 -
Tan02g2666 337 Gene3D - 49 300 - -
Tan02g2666 337 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 245 307 IPR000727 -
Tan02g2666 337 SMART tSNARE_6 240 307 IPR000727 -
Tan02g2666 337 MobiDBLite consensus disorder prediction 21 47 - -
Tan02g2666 337 ProSitePatterns Syntaxin / epimorphin family signature. 251 290 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Tan02g2666 337 PANTHER SYNTAXIN 54 326 IPR045242 GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Tan02g2666 337 Pfam SNARE domain 281 333 IPR000727 -
Tan02g2666 337 SUPERFAMILY t-snare proteins 52 300 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Tan02g2666 337 MobiDBLite consensus disorder prediction 168 234 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2666 Tan-Chr2:94990584 Tan04g0181 Tan-Chr4:1471316 2.60E-74 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2666 K08490 - csv:101203633 504.212