Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2670 ATGGACGTTCCCTCAGTGGAACTAAATTGTGAAAGTGAAGGAGACTCTTACCCTTTATTAATGGCCAGGCCAGAAAACTTTAGCAGCAGTGAGCATATCATTGACATAACTGGTACTGGTGATTCTGCCCCCTCTAGTTTGCCTCATGGTAGGAATTCAAATGGCTTAAATTCATCACAGCCTGAAGATATACCTTCAAGTAGTACACGAGTTCCCTTGTCTCAACCTTCGATTTCTGATACTGGATCAAATTCTAGAAATTCCTCATTCATAAGAAGAGGAGATGCACGGCGTCGTAGAAGTCCATTAAATTCTGGCTTATGGATATCTATTGAATTACTACTCACTATGAGCCAGATTATTGCAGCTATTATTGTATTATCATTGTCAAAGAATGAAAAACCTCGTGCACCTTTGTTTGCATGGATTGTGGGATATGCATCTGGATGTGGTGCCACCCTTCCTCTTCTCTATTGGCGTTATCGACACCGCAATCAGGCTTCAGAACAAGATTCTCTTCAATCTAGTCAGAATTCTACTCGCATTAATGTTCCTGCTGGGCCATTCTCTCTTTCAGTTTCTAGGGCATCAGAAGGGGAAGAACTTCATCATCCTGCCCCATCCCCCAGAGGCAGTCAAGGGTCAGGAGTACTGACAGCAAGATTAAAAGTATTGGTTGAATATTTTAAGATGGGCTTGGATTGCTTCTTTGCTGTTTGGTTTGTAGTTGGTAACGTTTGGATCTTTGGAGGGCATTCATCAGCATCTGAGGCTCCTAATTTGTACAGGCTATGTATAGTGTTTCTTACCTTTAGCTGTATTGGTTATGCCATGCCCTTCATTCTATGTGTAACCATCTGCTGTTGCCTACCTTGTATAATATCCATCCTTGGATTTAGAGAGGACTTGACACAGACCCGAGGAGCCACAACAGAATCTATTAATGCGTTGCCAACTTATAAGTTTAAGCTGAAGAAAAGTAGAAGTGGAAATGATAGAGAAAACAACGCTGGGGCTGGGGAAGGAGGAGGGGTTGTGGCTGCTGGAACTGAAAAGGAGCGAGTGATTTCAGGAGAAGATGCTGTCTGTTGCATCTGCTTGGCGAAATATGCTAACAATGATGAACTGAGAGAGTTGCCATGTTCTCACTTCTTCCACAAGGAATGTGTAGATAAATGGTTGAAGATCAACGCGCTGTGCCCGCTTTGCAAATCCGAGGTCGGTGAGAGTATCAATGGCTCGCTTGAGGGGGCAAATAGACAACAACAGACTGATTAG 1278 43.19 MDVPSVELNCESEGDSYPLLMARPENFSSSEHIIDITGTGDSAPSSLPHGRNSNGLNSSQPEDIPSSSTRVPLSQPSISDTGSNSRNSSFIRRGDARRRRSPLNSGLWISIELLLTMSQIIAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDSLQSSQNSTRINVPAGPFSLSVSRASEGEELHHPAPSPRGSQGSGVLTARLKVLVEYFKMGLDCFFAVWFVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDLTQTRGATTESINALPTYKFKLKKSRSGNDRENNAGAGEGGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKSEVGESINGSLEGANRQQQTD 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 95009816 95012977 - Tan0011726.1 Tan02g2670 745296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2670 425 SMART ring_2 363 403 IPR001841 -
Tan02g2670 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 412 IPR013083 -
Tan02g2670 425 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 408 - -
Tan02g2670 425 SUPERFAMILY RING/U-box 355 410 - -
Tan02g2670 425 MobiDBLite consensus disorder prediction 35 90 - -
Tan02g2670 425 ProSiteProfiles Zinc finger RING-type profile. 363 404 IPR001841 -
Tan02g2670 425 MobiDBLite consensus disorder prediction 35 96 - -
Tan02g2670 425 SMART ringv_2 362 404 IPR011016 GO:0008270(InterPro)
Tan02g2670 425 Pfam Ring finger domain 363 404 IPR001841 -
Tan02g2670 425 FunFam E3 ubiquitin-protein ligase 346 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3212 Tan-Chr1:86364109 Tan02g2670 Tan-Chr2:95009816 3.20E-45 dispersed
Tan02g2670 Tan-Chr2:95009816 Tan10g0280 Tan-Chr10:2419643 1.20E-39 dispersed
Tan02g2670 Tan-Chr2:95009816 Tan01g1081 Tan-Chr1:10662194 1.30E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2670 - - - 0.0