Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2683 ATGTCTCAGACCAACTGGGAAGCTGATAAAATGTTAGATGTATATATTCATGATTATTTGGTAAAAAGAGATTTGAAGGCTACTGCCCAGGCTTTTCAAGCAGAGGGAAAAGTGTCTTCGGATCCTGTGGCTATTGATGCGCCTGGAGGTTTTCTGTTCGAATGGTGGTCGGTATTCTGGGATATATTCATTGCTAGGACTAATGACAAGCACTCTGATGTTGCTGCATCTTATATCGAGACACAATTAATAAAAGCAAGAGAGCAACAACAGCATCAGCAGCATCAACAACAGCAGCAGCAGCAACCACAGGCACAACAACAGCAACCACAACACATGCAGATGCTTCTGATGCAGAGACATGCCCAACAGCAGCAGCAACAACAGCAACAACAACAGCATCAGCAGCAACAGCAGCCACAACAGCAACAACAACAGACCCAGCAACAGCAACAGCAGCGAAGAGATGGAGCCCAACTCTTAAATGGATCTTCAAATGGTTTTGTTGGAAATGATCCTCTTATGCGCCAGAATCCTGGATCTGTAAATGCATTGGCTACAAAAATGTATGAGGATAGATTGAAACTGCCACTTCAGAGGGATTCTCTAGATGATGCGGCTATGAAACAAAGATATGGGGAAAATGTTGGACAGCTGTTGGACCCAAATCATGCTTCAATTCTGAAGTCAGCTGCAGCAACCAGCCAGTCCTCAGGGCAAGTGTTACACAGTACAGCCGGGGGAATGTCTCCTCAAGTTCAGTCCAGGAGCCAGCAATTGCCGGGTTCCACACCGATGCAGGATATAAAGAGCGAGATCAACCCAGTTTTGAATCCTAGAGCTGCAGGCCCTGAGGGATCATTGATGGGCATTCCTGGATCAAATCATGGTGGCAATAATTTGACCTTAAAGGGATGGCCCCTCACTGGGCTAGATCAGCTTCGTTCTGGGATCCTTCAGCAACAAAAACCTTTCATACAGGCTCCTCAGCCATTTCCTCAGCTACAGATGTTGACACCACAACACCAACAACTTATGCTCGCACAGCAGAATTTGACATCACCTTCCGTTAATGACGATGGTAGAAGATTGAGAATGCTTTTGAACAGTCGAATTGCAAAAGATGGACTTTCAAATTCTGTTGGTGATGTTGTTCCAAATGTTGGATCTCCTCTCCAAGCTGGCAGTCCTCTTTTGCCACGTGGAGACAACACAGACATGATCCTTAAGATAAAAATGGCGCATTTACAGCAGCAACAACAGCAGCAACAGAATAGTAGCCAGCAACAACAGCAGCATCAACTTCAGCAGCATGCTCTTTCTAATCAACAATCACAAAGCTCAAACCACAATCTTCATCAGCAAGAAAAAATTGGGGGTGCTGGCAGTGTCACCATGGATGGTAGCATGTCAAACTCATTTCGTGGAAATGACCAGGTTTCAAAAAATCAGACCGGGAGAAAGAGGAAGCAGCCAGTGTCATCTTCAGGTCCAGCTAATAGCTCAGGAACAGCGAATACAGCAGGCCCATCCCCAAGTTCTGCTCCTTCAACTCCCTCAACTCACACACCTGGAGATGCAATCTCAATGCCTGCTTTGCCTCACAGTGGTAGTTCATCTAAACCTTTGATGATGTTTAGCAGTGATGGTACTGGCACTTTTACATCTCCCTCAAATCAGTTGGCTGACATGGATCGCTTTGTGGAGGATGGGTCTCTTGATGATAATGTAGAGTCTTTTTTATCCCATGATGATACGGACCCTAGAGATCCTGTTGGCCGTTGTATGGATGGCAGCAAAGGATTCACATTTACGGAGGTGAATTCTGTTAGAGCAAGCTCAAGCAAAGTCTCCTCTTGCCACTTTTCATCTGATGGAAAATTGCTTGCTAGTGGTGGCCATGATAAAAAGGCTGTATTATGGTACACGGAAAATTTGAAGCCAAAAACTTCACTTGAAGAACATGCTTCTATTATCACTGATGTTCGTTTCAGTCCTAGCATGCCCCGTCTCGCAACATCTTCATTCGACAGAACTGTCAGGGTTTGGGATGCCGACAATCCTTGTTATTCACTACGTACCTTTACGGGACATTCTACTTCTGTTATGTCTTTGGACTTCCATCCAAAGAAGGATGACCTTATCTGCTCTTGCGACGGTGACGGCGAGGTTCGATACTGGAATATCACTAATGGCAGCTGTGCAGCAGTATTCAAGGGTGGTACAGTCCAGCTGAGATTTCAACCTCGTCTTGGAAGGTACTTCGGTACTGCTGTAGATAATGTCGTATCCATTTTTGATGTTGAGACACAAACACGTCTGCATACATTACAGGGCCACAGCAAAGCGATTCAGTCTCTTTGTTGGGATCCTTCTGGAGAGTTCCTGGCATCCGTTAGTGAGGATTCTGTTCGGGTGTGGACTCTTGCTTCAGGGAGTGAGGGCGAATCCATTCACGAGTTGAGCATTAACGGCAATAAGTTCCACTCTTGCGTTTTCCATCCCACCTATTCTACTCTGCTGGTCATTGGATGTTACCAGTCGTTAGAGCTTTGGAACACGACCGAGAACAAGACGATGACTCTTTCAGCTCATGAAGGTTTAATATCTGCCTTAGCAGTGTCCACAGCATCGGGTCTAGTTGCTTCGGCCAGCCACGACAGGTTTATCAAGCTGTGGAAGTAA 2685 45.7 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNDKHSDVAASYIETQLIKAREQQQHQQHQQQQQQQPQAQQQQPQHMQMLLMQRHAQQQQQQQQQQQHQQQQQPQQQQQQTQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDAAMKQRYGENVGQLLDPNHASILKSAAATSQSSGQVLHSTAGGMSPQVQSRSQQLPGSTPMQDIKSEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLKGWPLTGLDQLRSGILQQQKPFIQAPQPFPQLQMLTPQHQQLMLAQQNLTSPSVNDDGRRLRMLLNSRIAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAHLQQQQQQQQNSSQQQQQHQLQQHALSNQQSQSSNHNLHQQEKIGGAGSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGSSSKPLMMFSSDGTGTFTSPSNQLADMDRFVEDGSLDDNVESFLSHDDTDPRDPVGRCMDGSKGFTFTEVNSVRASSSKVSSCHFSSDGKLLASGGHDKKAVLWYTENLKPKTSLEEHASIITDVRFSPSMPRLATSSFDRTVRVWDADNPCYSLRTFTGHSTSVMSLDFHPKKDDLICSCDGDGEVRYWNITNGSCAAVFKGGTVQLRFQPRLGRYFGTAVDNVVSIFDVETQTRLHTLQGHSKAIQSLCWDPSGEFLASVSEDSVRVWTLASGSEGESIHELSINGNKFHSCVFHPTYSTLLVIGCYQSLELWNTTENKTMTLSAHEGLISALAVSTASGLVASASHDRFIKLWK 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 95121253 95130071 - Tan0011570.3 Tan02g2683 745309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2683 894 CDD WD40 606 894 - -
Tan02g2683 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 862 894 IPR001680 GO:0005515(InterPro)
Tan02g2683 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 652 687 - -
Tan02g2683 894 MobiDBLite consensus disorder prediction 415 546 - -
Tan02g2683 894 MobiDBLite consensus disorder prediction 87 180 - -
Tan02g2683 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 652 687 IPR001680 GO:0005515(InterPro)
Tan02g2683 894 SMART WD40_4 645 684 IPR001680 GO:0005515(InterPro)
Tan02g2683 894 SMART WD40_4 814 853 IPR001680 GO:0005515(InterPro)
Tan02g2683 894 SMART WD40_4 688 728 IPR001680 GO:0005515(InterPro)
Tan02g2683 894 SMART WD40_4 731 767 IPR001680 GO:0005515(InterPro)
Tan02g2683 894 SMART WD40_4 770 808 IPR001680 GO:0005515(InterPro)
Tan02g2683 894 SMART WD40_4 855 894 IPR001680 GO:0005515(InterPro)
Tan02g2683 894 SMART WD40_4 603 642 IPR001680 GO:0005515(InterPro)
Tan02g2683 894 SUPERFAMILY WD40 repeat-like 604 894 IPR036322 GO:0005515(InterPro)
Tan02g2683 894 ProSitePatterns Trp-Asp (WD) repeats signature. 671 685 IPR019775 -
Tan02g2683 894 MobiDBLite consensus disorder prediction 415 458 - -
Tan02g2683 894 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515(InterPro)
Tan02g2683 894 Pfam LisH 10 36 IPR006594 GO:0005515(InterPro)
Tan02g2683 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 862 894 - -
Tan02g2683 894 Pfam WD domain, G-beta repeat 859 893 IPR001680 GO:0005515(InterPro)
Tan02g2683 894 Pfam WD domain, G-beta repeat 607 641 IPR001680 GO:0005515(InterPro)
Tan02g2683 894 Pfam WD domain, G-beta repeat 691 728 IPR001680 GO:0005515(InterPro)
Tan02g2683 894 Pfam WD domain, G-beta repeat 772 807 IPR001680 GO:0005515(InterPro)
Tan02g2683 894 Pfam WD domain, G-beta repeat 647 684 IPR001680 GO:0005515(InterPro)
Tan02g2683 894 PANTHER TRANSCRIPTION ACTIVATOR MSS11 3 894 - GO:0005634(PANTHER)
Tan02g2683 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 695 733 - -
Tan02g2683 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 777 817 IPR001680 GO:0005515(InterPro)
Tan02g2683 894 Gene3D - 596 745 IPR015943 GO:0005515(InterPro)
Tan02g2683 894 MobiDBLite consensus disorder prediction 465 525 - -
Tan02g2683 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 610 651 IPR001680 GO:0005515(InterPro)
Tan02g2683 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 695 737 IPR001680 GO:0005515(InterPro)
Tan02g2683 894 SMART Lish 8 40 IPR006594 GO:0005515(InterPro)
Tan02g2683 894 MobiDBLite consensus disorder prediction 238 266 - -
Tan02g2683 894 Gene3D - 746 894 IPR015943 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2683 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2681 Tan-Chr2:95121253 Tan02g2683 Tan-Chr2:95121253 0.00E+00 dispersed
Tan02g2683 Tan-Chr2:95121253 Tan10g0529 Tan-Chr10:4254361 1.60E-163 dispersed
Tan02g2682 Tan-Chr2:95121253 Tan02g2683 Tan-Chr2:95121253 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g428 . . . . . . . . . . . . . . . . . Bhi04g01021 Tan02g2683 . . . . . . . . . . . . . . . . . . . . . . Bda01g00984 . Bpe14g00568 . . . . . . . . . Car05g00599 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003018 4 4 2 1 1 1 2 1 1 1 1 1 1 1 1 3 1 5 3 1 1 1 1 1 1 1 1 4 3 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26864 PF00400 WD40 0.0084 CL0186 Tan TR