Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2689 ATGTCGACCGCCGCCGTGATCGGACATTCTAGCTCCTGGTCTCGCGCTCTCATCAACATCTCTCCCTACACTTTCTCCGCCGTCGGCATCGCCATCGCCATCGGCGTTTCCGTCCTCGGCGCCGCCTGGGGTATTTACATAACGGGAAGCAGTTTGATTGGTGCGGCGATTAAAGCTCCTCGTATTACTTCGAAAAACTTGATTAGTGTGATTTTCTGTGAGGCTGTTGCTATATACGGTGTCATTGTTGCCATTATCTTACAGACCAAGTTAGAGAGTGTATCAGCATCTCAGATATATGCCCCCGAGTCTCTGAGGGCAGGATATGCAATTTTTGCATCTGGAATCATAGTTGGCTTTGCAAACCTTGTCTGCGGGTTGTGTGTGGGAATCATTGGAAGCAGCTGTGCATTATCAGATGCCCAAAATTCCTCTCTGTTTGTGAAGATTCTTGTAATCGAGATCTTTGGCAGTGCACTTGGGTTGTTTGGAGTGATTGTTGGGATAATTATGTCAGCTCAAGCCTCTTGGCCTGCAAAGACAGGTTGA 549 48.09 MSTAAVIGHSSSWSRALINISPYTFSAVGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVSASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPAKTG 182
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 95206854 95208026 + Tan0017894.1 Tan02g2689 745315

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2689 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Tan02g2689 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Tan02g2689 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Tan02g2689 182 Gene3D - 23 177 IPR035921 -
Tan02g2689 182 FunFam V-type proton ATPase proteolipid subunit 23 178 - -
Tan02g2689 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Tan02g2689 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 9 175 - GO:0016021(PANTHER)
Tan02g2689 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Tan02g2689 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Tan02g2689 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Tan02g2689 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Tan02g2689 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Tan02g2689 182 Pfam ATP synthase subunit C 29 87 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2689 K03661 - - csv:101221052 327.791
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3674 Tan-Chr1:101590923 Tan02g2689 Tan-Chr2:95206854 8.20E-53 dispersed
Tan01g3673 Tan-Chr1:101590923 Tan02g2689 Tan-Chr2:95206854 1.60E-78 wgd
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g1718 . 1 996 Primary Pumps ATPases(2) AT1G10130 83.5 0.0e+00 1636.3
Tan05g0297 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.0 0.0e+00 1339.7
Tan02g2027 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.7 5.6e-301 1030.8
Tan02g2028 . 1 804 Primary Pumps ATPases(2) AT2G28520 63.6 1.4e-299 1026.2
Tan02g0771 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.1 1.3e-292 1003.0
Tan02g0771 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.9 0.0e+00 1231.1
Tan02g2027 . 1 808 Primary Pumps ATPases(2) AT2G21410 74.0 0.0e+00 1214.1
Tan02g2028 . 1 809 Primary Pumps ATPases(2) AT2G21410 73.9 0.0e+00 1209.5
Tan05g0297 . 9 818 Primary Pumps ATPases(2) AT2G21410 63.1 1.4e-299 1026.2
Tan02g0771 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1230.3
Tan02g2027 . 1 808 Primary Pumps ATPases(2) AT4G39080 74.7 0.0e+00 1211.8
Tan02g2028 . 1 809 Primary Pumps ATPases(2) AT4G39080 74.6 0.0e+00 1207.6
Tan05g0297 . 9 818 Primary Pumps ATPases(2) AT4G39080 64.2 1.2e-298 1023.1
Tan02g2042 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.0e-60 229.2
Tan02g2043 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.0e-60 229.2
Tan01g4004 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.0e-60 229.2
Tan02g2042 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.2e-66 250.4
Tan02g2043 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.0e-66 249.6
Tan01g4004 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 4.5e-66 248.4
Tan02g2043 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.2e-74 274.2
Tan01g4004 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.2e-74 274.2
Tan02g2042 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.4e-73 272.3
Tan01g4004 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 7.7e-53 203.8
Tan02g2043 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.7e-52 202.6
Tan02g2042 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 6.5e-52 200.7
Tan01g3673 . 4 180 Primary Pumps ATPases(2) AT2G25610 83.6 1.8e-71 266.5
Tan02g2689 . 1 180 Primary Pumps ATPases(2) AT2G25610 83.9 1.2e-70 263.8
Tan01g3674 . 4 119 Primary Pumps ATPases(2) AT2G25610 86.2 2.0e-46 183.3
Tan02g2042 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.6e-60 227.6
Tan02g2043 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.6e-60 227.6
Tan01g4004 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.6e-60 227.6
Tan01g3673 . 1 180 Primary Pumps ATPases(2) AT4G32530 76.2 1.2e-74 276.9
Tan02g2689 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 2.0e-72 269.6
Tan01g3674 . 1 126 Primary Pumps ATPases(2) AT4G32530 85.7 2.8e-50 196.1
Tan01g2494 . 1 1065 Primary Pumps ATPases(2) AT1G07810 81.5 0.0e+00 1690.6
Tan01g2494 . 1 1065 Primary Pumps ATPases(2) AT1G07670 81.2 0.0e+00 1688.7
Tan02g1718 . 1 996 Primary Pumps ATPases(2) AT1G10130 83.5 0.0e+00 1636.3
Tan01g2494 . 22 1046 Primary Pumps ATPases(2) AT4G00900 66.2 0.0e+00 1329.3
Tan11g1934 . 1 126 Primary Pumps ATPases(2) AT4G02620 83.3 9.2e-57 216.9
Tan11g1935 . 1 126 Primary Pumps ATPases(2) AT4G02620 83.3 9.2e-57 216.9
Tan09g0175 . 1 126 Primary Pumps ATPases(2) AT4G02620 83.3 9.2e-57 216.9
Tan02g0656 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.3 5.8e-269 923.7
Tan02g0657 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.3 5.8e-269 923.7
Tan11g1478 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.2 6.6e-180 627.5
Tan02g0107 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.6 9.5e-117 417.2
Tan02g0108 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.6 9.5e-117 417.2
Tan05g1770 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.0 2.8e-116 415.6
Tan05g1771 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.0 2.8e-116 415.6
Tan03g1281 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 1.4e-205 713.0
Tan03g1282 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 1.4e-205 713.0
Tan03g1283 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 1.4e-205 713.0
Tan02g2043 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.2e-74 274.2
Tan01g4004 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.2e-74 274.2
Tan02g2042 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.4e-73 272.3
Tan02g0656 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 2.6e-269 924.9
Tan02g0657 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 2.6e-269 924.9
Tan07g0064 . 1 176 Primary Pumps ATPases(2) AT1G64200 77.0 1.6e-65 246.5
Tan02g0656 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 1.2e-266 916.0
Tan02g0657 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 1.2e-266 916.0
Tan05g0297 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.0 0.0e+00 1339.7
Tan02g2027 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.7 5.6e-301 1030.8
Tan02g2028 . 1 804 Primary Pumps ATPases(2) AT2G28520 63.6 1.4e-299 1026.2
Tan02g0771 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.1 1.3e-292 1003.0
Tan07g1248 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 9.0e-192 666.8
Tan07g0064 . 1 231 Primary Pumps ATPases(2) AT4G11150 76.6 6.2e-88 321.2
Tan06g0024 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.6 0.0e+00 1177.2
Tan02g0656 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.3 5.8e-269 923.7
Tan02g0657 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.3 5.8e-269 923.7
Tan02g0656 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 2.6e-269 924.9
Tan02g0657 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 2.6e-269 924.9
Tan02g0656 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 1.2e-266 916.0
Tan02g0657 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 1.2e-266 916.0
Tan11g1478 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.2 6.6e-180 627.5
Tan02g0107 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.6 9.5e-117 417.2
Tan02g0108 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.6 9.5e-117 417.2
Tan05g1770 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.0 2.8e-116 415.6
Tan05g1771 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.0 2.8e-116 415.6
Tan07g0064 . 1 231 Primary Pumps ATPases(2) AT4G11150 76.6 6.2e-88 321.2
Tan07g0064 . 1 225 Primary Pumps ATPases(2) AT3G08560 69.9 6.0e-78 288.1
Tan07g0064 . 1 176 Primary Pumps ATPases(2) AT1G64200 77.0 1.6e-65 246.5
Tan11g1934 . 1 126 Primary Pumps ATPases(2) AT4G02620 83.3 9.2e-57 216.9
Tan11g1935 . 1 126 Primary Pumps ATPases(2) AT4G02620 83.3 9.2e-57 216.9
Tan09g0175 . 1 126 Primary Pumps ATPases(2) AT4G02620 83.3 9.2e-57 216.9
Tan03g1281 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 1.4e-205 713.0
Tan03g1282 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 1.4e-205 713.0
Tan03g1283 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 1.4e-205 713.0
Tan05g0297 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.0 0.0e+00 1339.7
Tan02g2027 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.7 5.6e-301 1030.8
Tan02g2028 . 1 804 Primary Pumps ATPases(2) AT2G28520 63.6 1.4e-299 1026.2
Tan02g0771 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.1 1.3e-292 1003.0
Tan02g0771 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.9 0.0e+00 1231.1
Tan02g2027 . 1 808 Primary Pumps ATPases(2) AT2G21410 74.0 0.0e+00 1214.1
Tan02g2028 . 1 809 Primary Pumps ATPases(2) AT2G21410 73.9 0.0e+00 1209.5
Tan05g0297 . 9 818 Primary Pumps ATPases(2) AT2G21410 63.1 1.4e-299 1026.2
Tan02g0771 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1230.3
Tan02g2027 . 1 808 Primary Pumps ATPases(2) AT4G39080 74.7 0.0e+00 1211.8
Tan02g2028 . 1 809 Primary Pumps ATPases(2) AT4G39080 74.6 0.0e+00 1207.6
Tan05g0297 . 9 818 Primary Pumps ATPases(2) AT4G39080 64.2 1.2e-298 1023.1
Tan02g2042 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.0e-60 229.2
Tan02g2043 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.0e-60 229.2
Tan01g4004 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.0e-60 229.2
Tan01g4004 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 7.7e-53 203.8
Tan02g2043 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.7e-52 202.6
Tan02g2042 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 6.5e-52 200.7
Tan02g2042 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.6e-60 227.6
Tan02g2043 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.6e-60 227.6
Tan01g4004 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.6e-60 227.6
Tan02g2042 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.2e-66 250.4
Tan02g2043 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.0e-66 249.6
Tan01g4004 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 4.5e-66 248.4
Tan02g2043 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.2e-74 274.2
Tan01g4004 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.2e-74 274.2
Tan02g2042 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.4e-73 272.3
Tan01g3673 . 1 180 Primary Pumps ATPases(2) AT4G32530 76.2 1.2e-74 276.9
Tan02g2689 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 2.0e-72 269.6
Tan01g3674 . 1 126 Primary Pumps ATPases(2) AT4G32530 85.7 2.8e-50 196.1
Tan01g3673 . 4 180 Primary Pumps ATPases(2) AT2G25610 83.6 1.8e-71 266.5
Tan02g2689 . 1 180 Primary Pumps ATPases(2) AT2G25610 83.9 1.2e-70 263.8
Tan01g3674 . 4 119 Primary Pumps ATPases(2) AT2G25610 86.2 2.0e-46 183.3
Tan07g1248 . 1 351 Primary Pumps ATPases(2) AT3G28710 94.3 7.8e-199 690.3
Tan07g1248 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 9.0e-192 666.8
Tan01g2494 . 1 1065 Primary Pumps ATPases(2) AT1G07810 81.5 0.0e+00 1690.6
Tan01g2494 . 22 1046 Primary Pumps ATPases(2) AT4G00900 66.2 0.0e+00 1329.3
Tan02g1718 . 1 996 Primary Pumps ATPases(2) AT1G10130 83.5 0.0e+00 1636.3
Tan01g2494 . 1 1065 Primary Pumps ATPases(2) AT1G07670 81.2 0.0e+00 1688.7
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001947 2 4 2 3 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 1 1 2 1 2 2 3 3 2 66