Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2744 ATGGCTTTCCGGAACCAACTCTCTCGGGACCTTCCTCTCCATTACGCGAACCAGCCTCAACAGCAGCAGCCGGAACGGCCGCTTTCTGATAACACTCTGCGTTCTATTTTATCTGATCAGCTTAACGACCACTCTCCGGCCGGGGATGGTTCTAAGTCTGAGCATCCGCTTCAGAGCACTCCGAATTGGTTGAATAGTGCGCTACTTCGGAATCAAACCCCTCATTCTCACTATTCTTGTGAGACCACGACGACTGCTACGGATAACGTCAACACCGACTTCCTTAATCTTCACACGACTGGTTCTAATTCCGCCGTCTCACACCCGTCTGGTCAATGGCTCTCCCGCCCGATCCTCCATCGCAATCACAGTGATGTTATCGATGAAGTCGCCGATGCCGCCGATGCTATGATTGGCGCCACCGCTACTCTTTCGCGCGAATCGGATGATTTGAAGAACAACAGCAGCGGCGGCGGAGGGGAGGGTGTGAACAACAGTGACGATGTGGCGGTTGAGAGCGATGGTAATGAAGGCGCTTATGGTGGAGAGGCGGCAGTGAATTGGCAGAATGCGCGGTCTAAGGCTGAAATTCTGGCGCATCCTCTTTACGAGCAGCTGCTCTCTGCTCACGTAGCCTGCCTCCGGATCGCAACACCGGTGGACCAGTTGCCTAGGATAGATTCTCAGCTTGCTCAGTCTCAGAATGTGGCGGCGAAATACTCGTCGCTGGGGCACGGTTCTCAGCCCATAGTCGGCAATGGAAAAGAGCTCGATCAGTTCATGACGCATTATGTTTTATTACTTTGTTCTTTTAAAGAACAACTTCAGCAACATGTTCGTGTCCATGCAATGGAAGCAGTTTATGCCTGCTGGGAAATTGAGCAATCTTTGCAAAGCTTAACAGGTGTTTCACCAGGTGAAGGTACGGGTGCTACAATGTCTGATGATGACGAAGACCAGATAGATAGCGATGCTAACTTGTTTGATGGAAGTTTGGAGGGTCACGATGCTATGGGATTTGGTCCTCTTATCCCAACAGAGAGTGAGAGATCCTTGATGGAGAGGGTGAGGCACGAATTGAAGCATGAACTAAAGAATGGTTACAAGGAGAAAATTGTAGACATAAGGGAGGAAATTTTACGAAAAAGGAGAGCAGGTAAACTTCCTGGTGACACTACGTCCGTCTTAAAAGCTTGGTGGCAATCACATTCAAAATGGCCATATCCTACTGAGGAAGATAAAGCAAAGTTGGTTCAGGAAACTGGTCTTCAACTGAAGCAGATAAATAACTGGTTTATCAACCAAAGGAAGAGGAATTGGCACACAAATCCTTCAACCTCAACAACCTTGAAGACTAAACGCAAAAGTAATGCAGGTGAAGCAACTGGCAACGACCATCCATAG 1404 48.72 MAFRNQLSRDLPLHYANQPQQQQPERPLSDNTLRSILSDQLNDHSPAGDGSKSEHPLQSTPNWLNSALLRNQTPHSHYSCETTTTATDNVNTDFLNLHTTGSNSAVSHPSGQWLSRPILHRNHSDVIDEVADAADAMIGATATLSRESDDLKNNSSGGGGEGVNNSDDVAVESDGNEGAYGGEAAVNWQNARSKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLAQSQNVAAKYSSLGHGSQPIVGNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQIDSDANLFDGSLEGHDAMGFGPLIPTESERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKTKRKSNAGEATGNDHP 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 95684812 95689714 - Tan0021244.1 Tan02g2744 745370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2744 467 Pfam KNOX2 domain 251 301 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan02g2744 467 MobiDBLite consensus disorder prediction 436 457 - -
Tan02g2744 467 MobiDBLite consensus disorder prediction 436 467 - -
Tan02g2744 467 SMART HOX_1 381 446 IPR001356 GO:0003677(InterPro)
Tan02g2744 467 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan02g2744 467 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677(InterPro)
Tan02g2744 467 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 191 441 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan02g2744 467 MobiDBLite consensus disorder prediction 147 162 - -
Tan02g2744 467 MobiDBLite consensus disorder prediction 40 60 - -
Tan02g2744 467 MobiDBLite consensus disorder prediction 11 28 - -
Tan02g2744 467 FunFam homeobox protein knotted-1-like 3 isoform X1 380 441 - -
Tan02g2744 467 SMART KNOX1_2 191 235 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan02g2744 467 SMART KNOX2_2 247 302 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan02g2744 467 Pfam KNOX1 domain 194 234 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan02g2744 467 Gene3D - 380 441 - -
Tan02g2744 467 Pfam ELK domain 359 380 IPR005539 GO:0003677(InterPro)
Tan02g2744 467 CDD homeodomain 382 443 IPR001356 GO:0003677(InterPro)
Tan02g2744 467 MobiDBLite consensus disorder prediction 1 28 - -
Tan02g2744 467 MobiDBLite consensus disorder prediction 147 178 - -
Tan02g2744 467 ProSiteProfiles ELK domain profile. 359 379 IPR005539 GO:0003677(InterPro)
Tan02g2744 467 SMART ELK_2 359 380 IPR005539 GO:0003677(InterPro)
Tan02g2744 467 SUPERFAMILY Homeodomain-like 381 445 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3601 Tan-Chr1:101022852 Tan02g2744 Tan-Chr2:95684812 4.60E-191 dispersed
Tan02g2744 Tan-Chr2:95684812 Tan07g1719 Tan-Chr7:68538804 2.30E-105 dispersed
Tan02g2744 Tan-Chr2:95684812 Tan02g2745 Tan-Chr2:95684812 1.90E-261 tandem
Tan01g3599 Tan-Chr1:101022852 Tan02g2744 Tan-Chr2:95684812 8.80E-190 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26867 PF03791 KNOX2 2.00E-19 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2744 - - - 0.0