Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2757 ATGTCGAAAGGTGATTCGATTCAAATCCGTGAGGTCTGGAACGCCAATTTGGAGGAGGAGTTTGCGCTTATCCGTGAAATTGTTGATGAGTTTAATTACATAGCCATGGATACTGAGTTCCCCGGCGTGGTCCTTCGACCGCTTGGTTCTTTCAAGAATATCAACGATTACAACTACCAGACTCTCAAGAGTAATGTTGACACCTTGAAGTTGATTCAATTGGGTCTTACGTTCTCTGATGAGAATGGAAATCTTCCCACTTGTGGAACGGATAAGTTTTGCATTTGGCAGTTCAATTTCCGCGAGTTCAACATTGTTAATGATATTTTTGCCAGTGATTCCATTGAGCTTCTGCGCCAGTGTGGTATTGATTTTCAGAAGAACAACCAAGAGGGTATCGATGTCAATCGCTTTGGTGAGCTTCTAATGTCTTCTGGGGTTGTGTTGAACGATGATGTTAGTTGGGTGACCTTCCACAGTGGGTATGATTTTGGTTACTTGCTCAAATTGCTGACTTGCCGAACCTTACCGGAAACGCAGGCCGGGTTTTTTGATTTGATCAATATCTATTTTCCGGTGCTTTATGACATCAAGCATTTGATGAAGTTTTGCAATAGTCTCCATGGTGGGCTGAACAAACTTGCCGAGTTATTAGAAGTGGAGAGGATTGGAGTTTGTCATCAAGCAGGATCAGATAGTCTGCTTACTGCCTGTACTTTTAGGAAGTTGAGGGATACCTTTTTCAATGGATCTACCCAGAAATACGCAGGTAACATTTGCAGACTCTGTCCATACGTGTGTTTTGAGGTATCCCTGCTTCTAATGTTTCTGACTGCTGACATGGTTGTAGAGTTTAGAGGCGTATCTCTGGCTCGGAAAATCAGAGTGGAATGTAAGAGCCTTGGAGATTTTACACCCCTGTTAATTTTTCTTCAGATCAAATATCACAAAATAAAGTGGATAAAAAAATCAATTTCAAATCTAGTAAAAAGTATAACACATGTCAATAAGTGGTTACTATGA 1023 40.96 MSKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGSFKNINDYNYQTLKSNVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIVNDIFASDSIELLRQCGIDFQKNNQEGIDVNRFGELLMSSGVVLNDDVSWVTFHSGYDFGYLLKLLTCRTLPETQAGFFDLINIYFPVLYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTQKYAGNICRLCPYVCFEVSLLLMFLTADMVVEFRGVSLARKIRVECKSLGDFTPLLIFLQIKYHKIKWIKKSISNLVKSITHVNKWLL 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 95846262 95849924 - Tan0013983.1 Tan02g2757 745383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2757 340 Pfam CAF1 family ribonuclease 12 133 IPR006941 -
Tan02g2757 340 SUPERFAMILY Ribonuclease H-like 9 253 IPR012337 -
Tan02g2757 340 Gene3D - 1 263 IPR036397 GO:0003676(InterPro)
Tan02g2757 340 FunFam Putative CCR4-associated factor 1 7 1 263 - -
Tan02g2757 340 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 7 262 IPR039637 GO:0000932(PANTHER)|GO:0004535(InterPro)|GO:0004535(PANTHER)|GO:0030014(InterPro)|GO:0030015(PANTHER)|GO:0043928(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2757 K12581 - - csv:101211817 492.271
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2757 Tan-Chr2:95846262 Tan05g1785 Tan-Chr5:59602488 3.10E-75 dispersed
Tan02g2756 Tan-Chr2:95835265 Tan02g2757 Tan-Chr2:95846262 2.60E-141 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g517 . . . . . . . . . . . . . . . . . Bhi04g00042 Tan02g2757 . . . . Lcy13g1825 . . . . . . . . . . . . . . . . Blo18g00012 . Bda13g01246 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000920 6 2 6 7 5 2 2 2 1 1 2 2 3 2 2 4 2 5 4 2 2 3 1 2 1 2 2 5 2 3 85