Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2763 ATGACAGTTACTCTTAATGCTTACAATGTAGTGGCTGCTCGTTGTGCGGCTGAATTCCTCGAAATGACAGAGGACATTGAAAGAGGAAATCTTATATTTAAGATTGAGGTGTTCCTAAACTCTAGCATCTTCCGTAGTTGGAAAGACTCCATCATTGTGCTCCAAACAGCCAAATCTCTTCTTCCATGGTCTGAAGATCTGAAGATTGTAGGGAGATGTATTGATTCTATTGCCTCAAAAACTTCTGTGGACCCTGCAAATATCACATGGTCTTACACATATAACAGGAAGTTATCAGAGGCCGATAAAATTGTAGAAGATAGAATGAAATACCAAAAGAAAATCGACAGTGTACCGAACGATTGGTGGGTTGAAGATGTTTGCGAGCTCGAGATCGATCTGTATAGGCGTGTTATGATTGCCGTGAAATCAAAGGGCAGAATGGATGGTTCTGTAATTGGAGAGGCACTGAAAACTTATGCTGTTAGATGGTTACCAGACACTGTAAATGCTTTGGCCTCTGATGCTCATATTAAGAGGAACAGATCTCTCATTGAAACAATCATTTGCTTATTGCCATCCGACAGAAACACGGGCTGTTCATGCAGTTTCTTGCTCAAACTCATAAAGGTTGCCATTTTGGTTGGAGCCGATGATGCATTGAGGGAGGATTTGGTTAAGAGAATTAGCTTGAAGCTGCATGAAGCTTCAGTCAAAGATTTGTTGATTCTTGCACAATCTCCTCAAGTTACAAGATATGATGTTGAATTGGTTTATAGGATTGTAAATCAGTATTTTGTTCACCAAAAGTTCAATCGAGATACTGATGTTGTCGAGAGGAGCGAGAAAGGAGCTGAAAATCTTTTACTGGGGCATGGGTCCTCATTGAATGTTGCTAAATTGATTGATGAGTATCTTGCTGAAATTGCTGATGACCCGAATCTCTCACTTGCTAGTTTCATTGACTTGTCACAGTCGATCCCTGAATTTGCAAGGCCAATACATGATAGATTATACAAAGCGGTTGACATTTATCTTAAGGTTCACCCAAGTTTGACAAAAGCTGATAAGAGGAAGATATGTGGTCTGATTGATGTCAAGAAACTTACAACGGAGGCGTCGATGCATGCAGCGCAGAATGAACGACTTCCCCTTAGAGTTGTAGTTCAAGTTCTGTTCTTTGAACAGGTTAGAGCCTCTGCTGGCGTCGAAGCGCAGCACAACTCTCGAGATTCTTCAAGTGTAATGACGAGCATAGACGAAGAATGTCCAAAGGAGCTGGATAGCTGCAAGTCTCTCAAACACAATATGGGGCATATGAAGATAAGTGAGGACATTCAGAAGACTAAGAAGTTAGCTAAGAAGAGCAGCAAGAACAGTAGAAGTGGTATGCAACTGTTGCCTTCAAGGTCGAGGAGAATATTCGATAAGTTATGGATTGTGGGTAAAGGGCACGGTGAAAGTCGGAGTCCCGAAACGTCGGGGAGTTCTCAGAGTCCAACTTCAGTGGTTCCTGGGGATATGAAGTCTTCTGGTTCATATGCAAGACAGAGGAGGCACTCAATATCTTAG 1572 41.86 MTVTLNAYNVVAARCAAEFLEMTEDIERGNLIFKIEVFLNSSIFRSWKDSIIVLQTAKSLLPWSEDLKIVGRCIDSIASKTSVDPANITWSYTYNRKLSEADKIVEDRMKYQKKIDSVPNDWWVEDVCELEIDLYRRVMIAVKSKGRMDGSVIGEALKTYAVRWLPDTVNALASDAHIKRNRSLIETIICLLPSDRNTGCSCSFLLKLIKVAILVGADDALREDLVKRISLKLHEASVKDLLILAQSPQVTRYDVELVYRIVNQYFVHQKFNRDTDVVERSEKGAENLLLGHGSSLNVAKLIDEYLAEIADDPNLSLASFIDLSQSIPEFARPIHDRLYKAVDIYLKVHPSLTKADKRKICGLIDVKKLTTEASMHAAQNERLPLRVVVQVLFFEQVRASAGVEAQHNSRDSSSVMTSIDEECPKELDSCKSLKHNMGHMKISEDIQKTKKLAKKSSKNSRSGMQLLPSRSRRIFDKLWIVGKGHGESRSPETSGSSQSPTSVVPGDMKSSGSYARQRRHSIS 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 95983481 95987260 - Tan0011554.2 Tan02g2763 745389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2763 523 MobiDBLite consensus disorder prediction 489 508 - -
Tan02g2763 523 MobiDBLite consensus disorder prediction 484 523 - -
Tan02g2763 523 PANTHER OS12G0117600 PROTEIN 1 458 IPR043454 -
Tan02g2763 523 Pfam NPH3 family 121 374 IPR027356 -
Tan02g2763 523 ProSiteProfiles NPH3 domain profile. 121 398 IPR027356 -
Tan02g2763 523 MobiDBLite consensus disorder prediction 440 467 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2763 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2763 Tan-Chr2:95983481 Tan03g1656 Tan-Chr3:72664259 3.00E-122 dispersed
Tan02g2762 Tan-Chr2:95983481 Tan02g2763 Tan-Chr2:95983481 1.70E-295 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g581 . . . . . . . . Cmo05g00352 Cmo12g00318 . Cma05g00348 . Car12g00348 Sed14g1268 Cpe07g00324 . Bhi04g00051 Tan02g2763 Cmetu04g0384 . . . . . . . . . . . . . . . . . . Cme03g01576 Blo17g00002 . Bda01g01360 . Bpe14g00601 . . Bma02g00007 . . . . Cma12g00365 . Car05g00294 Cpe11g00294 . . . . . . . . Cla08g01367 Cam08g1836 Cec08g1415 Cco08g1544 Clacu08g1531 . Cre08g1315 Lsi08g01250 . Chy03g01083 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004771 0 4 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 1 42