Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2785 ATGGCTTCGAAGCTTTGTGACTCCTGTAAGTCCGCCACCGCCACTCTCTTCTGCCGAGCTGACTCTGCCTTCCTTTGCCTTGGCTGTGACTCCAAAGTTCACGCAGCTAACAAGCTCGCTTCTCGCCATGCTCGCGTTTGGGTCTGTGAAGTCTGCGAGCAAGCTCCTGCTCATGTCACCTGCAAGGCCGACGCCGCCGCTCTCTGCCTCACTTGCGACCACGATATCCACTCTGCTAATCCTCTCGCTCGCCGTCACGAGCGAGTTCCCGTCACGCCTTTCTACGACTCTTCCAACTCCGATAACTCTCTCCCCGCTAAGCCTGGCGCTCCAATCAACTTCCTCGACGACCGTTACTTCTCTGATGTCGACGCCGACGCTGCTGATGTTAGCAGAGAAGAGGCCGAGGCTGCTTCCTGGCTTCTTCCGAACCCTAACCCTAAGCCAATCGAAAGTCCAGATCTGAACTCGGGGAAGTTTGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACGACCATGTAGATCCAAAATTAGAAGTGCAAGAGCAGAACAGCTCCGGCGCCGATGGAGTCGTTCCGGTTCAGACCAAAGGCGTCCATCTCTCATCGGTGAACGATCGCTGTTTCGGCATCGACTTCCCCGGCGCTAAATCGTTTCCATACGGCTACAATCCTCAGTCAATCAGTCACAGTGTATCATCCTCGTCGATCGAGGTCGGAGTTGTCCCGGACGGCAACGCGATGACGGAGATATCTAATCCGTACACGAAACCGTCGACGGAATCGACAGTTCCACCGCTGCAAATCTCGCCGGCGGACCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACGATCCGATACGCATCTCGTAAGGCCTACGCCGAGACGAGACCAAGAATCAAAGGACGGTTCGCCAAACGGACGGACATCGAACTTGAGGTTGACCGAGTGAGTGGATACGGCGTCGTTCCGTCCTTCTAA 1014 54.83 MASKLCDSCKSATATLFCRADSAFLCLGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCLTCDHDIHSANPLARRHERVPVTPFYDSSNSDNSLPAKPGAPINFLDDRYFSDVDADAADVSREEAEAASWLLPNPNPKPIESPDLNSGKFEFPEMDPYLDLDYDHVDPKLEVQEQNSSGADGVVPVQTKGVHLSSVNDRCFGIDFPGAKSFPYGYNPQSISHSVSSSSIEVGVVPDGNAMTEISNPYTKPSTESTVPPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELEVDRVSGYGVVPSF 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 96133046 96134945 - Tan0006982.1 Tan02g2785 745411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2785 337 CDD Bbox1_BBX-like 48 91 IPR049808 -
Tan02g2785 337 CDD Bbox1_BBX-like 5 48 IPR049808 -
Tan02g2785 337 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270(InterPro)
Tan02g2785 337 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
Tan02g2785 337 ProSiteProfiles CCT domain profile. 276 318 IPR010402 GO:0005515(InterPro)
Tan02g2785 337 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270(InterPro)
Tan02g2785 337 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270(InterPro)
Tan02g2785 337 Pfam CCT motif 276 318 IPR010402 GO:0005515(InterPro)
Tan02g2785 337 SMART bboxneu5 1 48 IPR000315 GO:0008270(InterPro)
Tan02g2785 337 SMART bboxneu5 49 91 IPR000315 GO:0008270(InterPro)
Tan02g2785 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 320 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2785 Tan-Chr2:96133046 Tan08g0825 Tan-Chr8:9939141 8.30E-41 dispersed
Tan02g2785 Tan-Chr2:96133046 Tan09g1648 Tan-Chr9:68139619 3.00E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26874 PF00643 zf-B_box 3.60E-06 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2785 - - - 0.0