Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2792 ATGAGGAAAGGCCGAAAGGTTGTGAAAGGTGGTTTTTGGGTGTTGTTCATGGTCTTGGTGGCGGCGGTGGAAGTGAAGGTGGGTGTTGTTTTGGATTTGAATTATTGTATTGGGAAGATGGGTCTGAGTTGCATTTCGATGGCTCTCACTGATTTCTATGCTTGTCGGAGTTGTTACAAAACCAAAGTGATTCTCAACACTATGGACTCCAATGGTACTGTTCTTGGTGCAGCTGCTCCAGCTCTAGATTTGATAAAGAAAGAGGAAGTGCAAGCCATCATAGGCCCAACAAGCTCGATGGAAGCCAACTTCATGATCGACGTTGGACACAAAGCAGAAGTTCCCATCATCTCATTTTCAGCCACACGACCTTCTCTCACATCCCATCGTAGCCCTTTCTTCTTCCGAGTCGCCCAAGACGATTCCTATCAAGTTAAAGCCATTGGAGCTCTCGTGAAAACCTTCAAATGGCGACGCGTCGTCCCCATCTACGTCGACAACGAATTCGGCGACGGAATCATCCCTTACCTTGTTGACGCTCTACAAAAGGTCAATGCACACGTTCCCTACCAGAGCCTCATCTCGCCTACGGCCACCGACGATCAAATCACAGGAGAACTTTACAGGTTGATGACGATGCAGACGAGAGTGTTTGTGGTGCACATGTTACCAGAACTTGCGTCTCGCGTCTTCATCAAGGCCAAACAGATTGGAATGATGGAGCAAGGCTATGTTTGGATAATGACGAATGGTATCACAAACGAGTTGGATTCAATACAACCTTCAACTATTGAGTCTATGCAAGGAGTTTTGGGGATAAAAACTTACGTCCCACGAACCGGAAGGCTCGAAGCCTTCAAATATGGTTGGCGGAAGAGAGTTCGAAGGTATTATCCAACCATGGAAGACAAAGACATTCTAGAGCTGAATGTGTTTGGGTTATGGGCTTACGACGCCGCTTGGGCGCTGGCCATCGCCGTGGAGAAGGCCGGCACCGACAACCTTCGATTCAGCCCGGCTAATAATGATACCGCCTTGAAAATGAACTCATCAAACTATCTATACAGCCTTGGTGTTAATAAAAATGGTAAGAAGCTGAAAGAAGCCTTCTCAAACGTCACGTTCAGTGGGTTGGCCGGTGAGTTCAGTCTCATAAACGGGCAATTGCCGTGGTCGGTTTTTGAGATAGTGAATGTGATTGAAAATGGAAGAAGAAATGTTGGGTTTTGGTCGCCGGAAACTGGGCTGACGAGGAAATCGCTTGATTCAGCAGAAAGAATAAGTGAGCTGAAATCGATCATTTGGCCAGGAAAACCGGGTTATCCTCCAAAAGGGTGGCAGATCCCGACGAATGAGAAGAAGTTGAGAGTGGTGGTTCCAGTTAAGGATGGATTTGAAGAGTTTGTGAGTGTGGTTCATGATCCCAAAACAAATATAACAAAAGTGAGTGGATATTGTATTGATGTATTCAAAGCTGTGATTGAAGCATTGCCTTATGCTGTTGCTTATGAGCTCATTCCTTCCCCCAAATCCGCTGCAGAACCAGGTGGCACCTACAATGACTTGGTTTATCAGATCTTTGATGGGAAGTTTGATGCCATTGCGGGTGACGTAACGATCCGAGCGAACAGGTCAAAATACGTAGACTTCACATTGCCGTTCACAGGTTCGGGCGTGTCGTTGGTGGTGCCGAGGAAGGCCACCAAGAAAACCATTATGGTTCCGCTCACTACCTTATTTTTCATAATCGTGGCAGCAGTTGTTTGGATCCTAGAACATCGAGTTAACGAAGACTTTAATGGTCATCCTTTTGATCAGATCTGCACTAGTCTTTGGTACTCTTTCTCCACCATGGTTTTTGCCCATCGGGAGATTACGTTAAACAACTGGACTCGACTTGTGGTGATAATATGGTTGTTTGTGGTTCTGATCATTACACAGAGTTACACTGCAAGTTTGTCCTCACTTTTGACGGTTCAAGAGTTTAAACCCACAATAACTAATATCAGTGAGCTGGTTAATACTACAGAGTTTGTTGGACATAAAGCAGGTTCTTTCGTTCGTGAGATCCTCTTGTCGTCGGGGATCAAAGAATCCCAACTCAAATATTACCGCACTATACAAGAAATGCACCAACTTTTATCCAAAGGAAGCGCCAATGATGGTATTTCTGCTGCCATGGATGGAATCCCTTATATTAAGTTGCTTCTTGCCAAGTACTGCTCGCAATATGTCACCACTGGACAAATCTATAAAGCTGAGGGCTTTGGTTTTGGTTTCCCAAAAGGTTCACCATTAGTACCAGATATCTCTCGAGCCATCTTGGAGGTGACCGAAAGTGATAGAATGATAGAGATCCAAAACGCGTGGTTCAAAAAAGTGGGAGAGTGTTCTGCTTCAGAATCCGCCGGGCTGTCTTCCACCCGTTTGAGTGTTTGGAGCTTTTGGGGACTTTTCTTGATAATCGGCGTTGTTGCCTTATTTTCTGTGGCCGTTTACGTTGCCAAATTTGTGTACGACGAACGGGCAGTGTGGCAGAATGCAAATGCTTCGATTGGGGAAATATTATGCGACTTGGTTGGCAAGTTCAAGACAAGAGATGCGAGAGCTCACTCACTGAGGAGAAGGATATTCATAAATGGCATTCGTGTTCATCCACAAACAGTAGTTGTTCAAGATGATCATCCTCGAAGAGATTGA 2700 45.33 MRKGRKVVKGGFWVLFMVLVAAVEVKVGVVLDLNYCIGKMGLSCISMALTDFYACRSCYKTKVILNTMDSNGTVLGAAAPALDLIKKEEVQAIIGPTSSMEANFMIDVGHKAEVPIISFSATRPSLTSHRSPFFFRVAQDDSYQVKAIGALVKTFKWRRVVPIYVDNEFGDGIIPYLVDALQKVNAHVPYQSLISPTATDDQITGELYRLMTMQTRVFVVHMLPELASRVFIKAKQIGMMEQGYVWIMTNGITNELDSIQPSTIESMQGVLGIKTYVPRTGRLEAFKYGWRKRVRRYYPTMEDKDILELNVFGLWAYDAAWALAIAVEKAGTDNLRFSPANNDTALKMNSSNYLYSLGVNKNGKKLKEAFSNVTFSGLAGEFSLINGQLPWSVFEIVNVIENGRRNVGFWSPETGLTRKSLDSAERISELKSIIWPGKPGYPPKGWQIPTNEKKLRVVVPVKDGFEEFVSVVHDPKTNITKVSGYCIDVFKAVIEALPYAVAYELIPSPKSAAEPGGTYNDLVYQIFDGKFDAIAGDVTIRANRSKYVDFTLPFTGSGVSLVVPRKATKKTIMVPLTTLFFIIVAAVVWILEHRVNEDFNGHPFDQICTSLWYSFSTMVFAHREITLNNWTRLVVIIWLFVVLIITQSYTASLSSLLTVQEFKPTITNISELVNTTEFVGHKAGSFVREILLSSGIKESQLKYYRTIQEMHQLLSKGSANDGISAAMDGIPYIKLLLAKYCSQYVTTGQIYKAEGFGFGFPKGSPLVPDISRAILEVTESDRMIEIQNAWFKKVGECSASESAGLSSTRLSVWSFWGLFLIIGVVALFSVAVYVAKFVYDERAVWQNANASIGEILCDLVGKFKTRDARAHSLRRRIFINGIRVHPQTVVVQDDHPRRD 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 96193127 96214714 + Tan0020650.1 Tan02g2792 745418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2792 899 Gene3D - 454 575 - -
Tan02g2792 899 Gene3D - 49 145 - -
Tan02g2792 899 FunFam Glutamate receptor 146 304 - -
Tan02g2792 899 Gene3D - 734 799 - -
Tan02g2792 899 FunFam Glutamate receptor 568 692 - -
Tan02g2792 899 Pfam Ligated ion channel L-glutamate- and glycine-binding site 475 564 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan02g2792 899 Gene3D - 576 694 - -
Tan02g2792 899 Pfam Receptor family ligand binding region 44 401 IPR001828 -
Tan02g2792 899 FunFam Glutamate receptor 454 573 - -
Tan02g2792 899 Gene3D - 146 307 - -
Tan02g2792 899 Gene3D - 344 453 - -
Tan02g2792 899 CDD GluR_Plant 453 791 - -
Tan02g2792 899 CDD PBP1_GABAb_receptor_plant 26 419 IPR044440 -
Tan02g2792 899 SUPERFAMILY Periplasmic binding protein-like I 24 446 IPR028082 -
Tan02g2792 899 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 25 857 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Tan02g2792 899 PIRSF IGluLR_plant 11 896 IPR017103 -
Tan02g2792 899 SUPERFAMILY Periplasmic binding protein-like II 433 792 - -
Tan02g2792 899 Pfam Ligand-gated ion channel 577 824 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan02g2792 899 SMART GluR_14 454 793 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2792 K05387 - - csv:101204040 1187.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2792 Tan-Chr2:96193127 Tan04g2741 Tan-Chr4:86837837 1.20E-219 dispersed
Tan02g2792 Tan-Chr2:96193127 Tan02g2793 Tan-Chr2:96223220 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g631 . . . . . . . . . Cmo12g00332 . . . . . Cpe07g00336 . Bhi04g00081 Tan02g2792 . . Hepe10g0197 . Lcy13g1866 . . . . . . . . . . . . . . Cme03g01551 . . Bda01g01359 . . . . . . . . . Cma12g00380 . . . . . . . . . . . . . . . . . . . . Chy03g01064 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202