Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2793 ATGAGGAGAAGGTTGGCTTTGAGAGGTGGGTTTGGGGTGTTGGTGATGGTGATGGTTTTCTTCATTAACATAGTATTGGCGGTGGCGCAGATGACGGAGTTGGAGTTGGAGGAGGAGGCAGCTGCGGCTGCGGCAGTGAATGTGAAGGTTGGTGTGGTTTTGGATTTGAATGCTTTTGTTGGGCAGATGGGTCTGATTTGCATTTCAATGGCTCTCTCTGATTTCTATGCTTCTCGGAGTTATTATAAGACCAGACTGATTCTTAACAGCATTGACTCCAATGGCAGTGTTGTTCGTGCAGCTGCTGCAGCTTTGGATTTGATAAAGAAAGAAGAAGTGCAAGGCATTATAGGGCCAACAAGTTCCATGCAAGCCAGCTTCATGATCGACCTTGGAGATAATGCACAAGTTCCCATCATCTCATATTCAGCCACAAGACCTTCCCTCACATCCCACCACAGCTCTTTCTTCTTCCGAGTGGCCCAAAACGATTCCTCTCAAGTGAAAGCCATTGGAGCCATCGTCAAGGCCTTCAAATGGCGACAGGTCGTCCCCATCTATGTCGACAATGAGTTTGGTGAGGGAATCATCCCTTACCTTATCGATGCTCTACAAGAGGTTGATGCGCACGTGCCGTACCAAAGCATAATTTCCCCCACTGCCACGGATGAGCAAATTGGCCATGAACTTTACAAGTTAATGACAATGCAGACCAGAGTGTTTGTGGTGCACATGTTACCTCGTCATGCTTCTCGACTCTTCACAAAGGCTAAAGAGATTGGAATGATGAAGCGTGGCTACGTTTGGATAATCACAGATGCTATTGCAAACGCGTTGGATTTAATAGAATCTTCAATATTGGAGTCGATGCAAGGAGTTGTAGGAGTAAGAAGTTACGTTCAAAAAACTGAAAGAATTGAATCCGTCAAACTTGAATGGCGGAAGAGATTTCGAATGTATTACCCAAACATAGAAACATTTCCTGATCTTAACGTGTTTGGTTTATGGGCTTACGACGCAGCTTGGGCACTAGCCATCGCAGTAGAGAAGGCCGGAACCGATAACCTCAAATACAATCCGGCCAACATTACTGCCACGGAAATGAACTCCTCAAACTATTTATACAACCTTGGCGTCAACCAAAATGGTCTGAAGTTGCGAGACGCGTTTTCAAATGTCGGGTTCAGGGGCCTAGCCGGCGAGTTTAGTCTTATCAATGGGCAATTGGAATCGTCTGCTTTTGAGATAGTGAATCTGGTTGATAATGGTCGAAGAAATGTTGGATTTTGGTCACCAGAAACTGGGCTAACGAGAAAACTACATGATTCGACTAGAGCGAGTGGGTTGAGATCGATCATCTGGCCGGGAGAGCCAATTTCTGCACCAAGAGGGTGGGAGATTCCGACGAATGGGAAAAAGTTAAGAGTTGGGGTTCCAGTGAAAGATGGATTTTTTGAGTTTGTGAACGTGGTTCGTGATCCCAAAACAAACGAAACACAAGTGAGTGGATATTGCATAGATGTGTTCAAGGCTGTGATTGAAGCTTTGCCTTATGCTGTTGCTTATGAGTTCATTCCTACCGACAAAGCCAATGCAGACCCAGGTGGTAGCTATAATGACTTGGCTTATCAACTCTTCCTTGGGAAATTTGATGCGGTGGTGGGTGACATAACAATCCGAGCAAATAGGTCTTTATACATAGATTACACACTGCCATATACAGAATCGGGCGTGTCTATGGTTGTGCCAATGAAGAGGATGAAGGACACCAATGCATGGGTATTCTTAAAACCTCTTACTTGGAGACTATGGCTGCTCGTAGGTGGCTCGTTCCTCTTTATAGCACTTGTTGTTTGGATCTTAGAACATCGAATCAACGAAGAATTCGAAGGACATCCTGTGGATCAGATCTGCACCAGTCTTTGGTACTCTTTCTCCACTATGGTTTTTGCCCATAGGGATATTACGTTCAACAACTGGACTAGATTTGTTGTGATAATATGGCTATTTGTGGTTCTCATCATTACACAAAGTTACACTGCAAGTTTGGCCTCACTTCTAACGGTTCAAGAGCTGAAACCGGCTATAACTGATATCAATCAATTGCTTAAAAATGGAGAGAACATTGGATATCAAGGAGGTTCTTTCATCTATGAGATTCTCAAGTCATTGAAGTTCGAGGATTCCCAACTTAAAACTTACCAGTCTGTTGAAGAAATGCATGAACTTTTCACCAAAGGAAGCATCAACGATGGAATTTCTGCTGCCGTTGATGAAACCCCATACATTAAATTGTTTCTCTCTAAGTACTGCTCACAATATACCACCACAGAACCCACTTATAAAGCTGATGGCTTTGGCTTTGGGTTTCCAAGAGGTTCGCCGTTGGTACCAGATATCTCGAGGGCAATCTTGAAGGTGACAGAAAGTGATAGAATGAGAGAGATTGAAAGCGCATGGTTCAAAAAGGTGAGAGAATGTTCGGCTTCAGAAGCTGCTGAGTTATCTTCCACCCGCTTAGGTGCTGACAGCTTTTGGGTACTTTTCGCGATTACCGGCGGTATTTCCATATTCTCAATCGTCGTTTACTTCAGCAAATTTATCTACGATGAACGACAGCTTGAGCAGAATCAAAATGCTTCCATCTGGAGAATATTCCCCAACTTGGTTCTCAGGTTTTTTACTGGTGATGATAGAGCTCACCCGCCGAGGAAAAGAATATACATAAATGGCGTTCCTGTTCGTATAGAAGAGATAGCTTTTAAAGTTCTTCAATAG 2778 43.84 MRRRLALRGGFGVLVMVMVFFINIVLAVAQMTELELEEEAAAAAAVNVKVGVVLDLNAFVGQMGLICISMALSDFYASRSYYKTRLILNSIDSNGSVVRAAAAALDLIKKEEVQGIIGPTSSMQASFMIDLGDNAQVPIISYSATRPSLTSHHSSFFFRVAQNDSSQVKAIGAIVKAFKWRQVVPIYVDNEFGEGIIPYLIDALQEVDAHVPYQSIISPTATDEQIGHELYKLMTMQTRVFVVHMLPRHASRLFTKAKEIGMMKRGYVWIITDAIANALDLIESSILESMQGVVGVRSYVQKTERIESVKLEWRKRFRMYYPNIETFPDLNVFGLWAYDAAWALAIAVEKAGTDNLKYNPANITATEMNSSNYLYNLGVNQNGLKLRDAFSNVGFRGLAGEFSLINGQLESSAFEIVNLVDNGRRNVGFWSPETGLTRKLHDSTRASGLRSIIWPGEPISAPRGWEIPTNGKKLRVGVPVKDGFFEFVNVVRDPKTNETQVSGYCIDVFKAVIEALPYAVAYEFIPTDKANADPGGSYNDLAYQLFLGKFDAVVGDITIRANRSLYIDYTLPYTESGVSMVVPMKRMKDTNAWVFLKPLTWRLWLLVGGSFLFIALVVWILEHRINEEFEGHPVDQICTSLWYSFSTMVFAHRDITFNNWTRFVVIIWLFVVLIITQSYTASLASLLTVQELKPAITDINQLLKNGENIGYQGGSFIYEILKSLKFEDSQLKTYQSVEEMHELFTKGSINDGISAAVDETPYIKLFLSKYCSQYTTTEPTYKADGFGFGFPRGSPLVPDISRAILKVTESDRMREIESAWFKKVRECSASEAAELSSTRLGADSFWVLFAITGGISIFSIVVYFSKFIYDERQLEQNQNASIWRIFPNLVLRFFTGDDRAHPPRKRIYINGVPVRIEEIAFKVLQ 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 96223220 96232136 + Tan0010800.1 Tan02g2793 745419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2793 925 SUPERFAMILY Periplasmic binding protein-like II 449 822 - -
Tan02g2793 925 Pfam Ligated ion channel L-glutamate- and glycine-binding site 495 583 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan02g2793 925 Gene3D - 170 332 - -
Tan02g2793 925 Gene3D - 78 169 - -
Tan02g2793 925 Gene3D - 473 592 - -
Tan02g2793 925 CDD PBP1_GABAb_receptor_plant 49 440 IPR044440 -
Tan02g2793 925 FunFam Glutamate receptor 592 722 - -
Tan02g2793 925 CDD GluR_Plant 472 821 - -
Tan02g2793 925 PIRSF IGluLR_plant 10 907 IPR017103 -
Tan02g2793 925 FunFam Glutamate receptor 2.7 729 829 - -
Tan02g2793 925 FunFam Glutamate receptor 473 592 - -
Tan02g2793 925 Gene3D - 768 829 - -
Tan02g2793 925 Gene3D - 362 472 - -
Tan02g2793 925 Pfam Ligand-gated ion channel 600 853 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan02g2793 925 FunFam Glutamate receptor 169 327 - -
Tan02g2793 925 Pfam Receptor family ligand binding region 67 421 IPR001828 -
Tan02g2793 925 Gene3D - 593 733 - -
Tan02g2793 925 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 48 873 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Tan02g2793 925 SUPERFAMILY Periplasmic binding protein-like I 40 456 IPR028082 -
Tan02g2793 925 SMART GluR_14 473 823 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1558 Tan-Chr2:69029092 Tan02g2793 Tan-Chr2:96223220 5.00E-245 dispersed
Tan02g1826 Tan-Chr2:84008570 Tan02g2793 Tan-Chr2:96223220 1.20E-93 dispersed
Tan02g1827 Tan-Chr2:84066542 Tan02g2793 Tan-Chr2:96223220 2.80E-88 dispersed
Tan02g2793 Tan-Chr2:96223220 Tan04g2741 Tan-Chr4:86837837 5.90E-238 dispersed
Tan02g2792 Tan-Chr2:96193127 Tan02g2793 Tan-Chr2:96223220 0.00E+00 tandem
Tan02g2793 Tan-Chr2:96223220 Tan02g2794 Tan-Chr2:96237029 5.70E-209 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2793 K05387 - csv:101203305 1308.89