Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2829 ATGGAGAAACTGTATTCATTGACATTTGCTTTCTCTCTTGCTCTCTCTAACTTCTTCTTTGTTGCCAATGCATTCACCGCGTCGGGATGGAATGCCGCTCATGCCACCTTCTACGGTGGTAGCGATGCTTCAGGAACAATGGGTGGAGCTTGTGGGTATGGGAACTTGTACGAGACGGGTTACGGGACGAGAACGGCGGCGCTGAGCACGGCGCTATTCAACGAGGGAGCATCGTGCGGGCAGTGCTTCAAGATAATCTGCGATTACAAGACCGATCCACGTTGGTGCATCAAAGGGGCGTCGGTGACGGTGACGGCCACCAATTTCTGCCCACCAAACTTGGCTTTGCCAAACAACAATGGCGGCTGGTGCAACCCTCCTCTTAAGCACTTCGACATGGCTCAGCCTGCTTGGCAGAAGATCGGCATTTACAGGGGCGGAATCATCCCTGTTCTTTACCAAAGGGTTCCTTGTGTAAAGAAAGGAGGTGTGAGATTCACAGTGAATGGAAGAGACTATTTTGAACTTGTTTTGATAAGTAATGTGGGAGGAGCTGGGGACATCCAATCAGTGTCCATAAAAGGATCCAAATCCAACAATTGGATGCCAATGTCAAGGAATTGGGGTGCCAATTGGCAGTCCAATTCCTATCTAAATGCCCAATCTTTGTCCTTCAAGCTCACCACAACTGATGGCCAAATCCAAGTTTTCAATAATGTTGTCCCTTCAACTTGGAGATTTGGCCAAACATTTGCAACCAAGGTCCAATTCCGCTGA 777 48.78 MEKLYSLTFAFSLALSNFFFVANAFTASGWNAAHATFYGGSDASGTMGGACGYGNLYETGYGTRTAALSTALFNEGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNLALPNNNGGWCNPPLKHFDMAQPAWQKIGIYRGGIIPVLYQRVPCVKKGGVRFTVNGRDYFELVLISNVGGAGDIQSVSIKGSKSNNWMPMSRNWGANWQSNSYLNAQSLSFKLTTTDGQIQVFNNVVPSTWRFGQTFATKVQFR 258
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 96574006 96575571 - Tan0018842.1 Tan02g2829 745455
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2829 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 163 IPR007112 -
Tan02g2829 258 Gene3D - 19 158 IPR036908 -
Tan02g2829 258 Pfam Expansin C-terminal domain 164 242 IPR007117 -
Tan02g2829 258 SMART dpbb_1 65 153 IPR007112 -
Tan02g2829 258 FunFam Expansin 163 257 - -
Tan02g2829 258 Gene3D - 163 258 IPR036749 -
Tan02g2829 258 CDD DPBB_EXPA_N 29 158 - -
Tan02g2829 258 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Tan02g2829 258 PRINTS Expansin signature 102 112 IPR002963 GO:0009664(InterPro)
Tan02g2829 258 PRINTS Expansin signature 138 151 IPR002963 GO:0009664(InterPro)
Tan02g2829 258 PRINTS Expansin signature 174 195 IPR002963 GO:0009664(InterPro)
Tan02g2829 258 PRINTS Expansin signature 121 138 IPR002963 GO:0009664(InterPro)
Tan02g2829 258 PRINTS Expansin signature 162 174 IPR002963 GO:0009664(InterPro)
Tan02g2829 258 PRINTS Expansin signature 60 74 IPR002963 GO:0009664(InterPro)
Tan02g2829 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664(InterPro)
Tan02g2829 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664(InterPro)
Tan02g2829 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664(InterPro)
Tan02g2829 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 253 IPR007117 -
Tan02g2829 258 SUPERFAMILY Barwin-like endoglucanases 19 181 IPR036908 -
Tan02g2829 258 Pfam Lytic transglycolase 65 153 IPR009009 -
Tan02g2829 258 PANTHER EXPANSIN-A15 19 254 IPR002963 GO:0009664(InterPro)
Tan02g2829 258 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576(InterPro)
Tan02g2829 258 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576(InterPro)
Tan02g2829 258 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576(InterPro)
Tan02g2829 258 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576(InterPro)
Tan02g2829 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576(InterPro)
Tan02g2829 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576(InterPro)
Tan02g2829 258 FunFam Expansin 19 159 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1565 Tan-Chr1:15904850 Tan02g2829 Tan-Chr2:96574006 1.60E-74 dispersed
Tan02g2829 Tan-Chr2:96574006 Tan11g0331 Tan-Chr11:2588227 4.20E-93 dispersed
Tan02g2829 Tan-Chr2:96574006 Tan04g1065 Tan-Chr4:9555230 3.40E-95 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2829 - - - 0.0