Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2840 ATGGGGTTGCTTAGTAGTATACTGGGTTTCTTTGGCTTTGGCTTGGGAACCTCGATTGGGCTTGTGGTTGGATATTACATGTTCATCTATTTTCAGCCGTCAGATGTCAAGGATCCCATTCTTCGCCCTTTGGTTGAGCAAGATTCAGGCTCATTGTTGCGGATGATGCCAGAAATACCTTTGTGGGTGAAAAATCCTGATTACGATCGGATTGACTGGCTCAACAAATTCCTTGAAAATATGTGGCCTTACTTGGACAAGGCTATTTGCAAGACAGTGAAGAATATTGCAAAGCCCATTATTGCAGAACAAATTCCAAAATACAAAATCGACGCTGTTGAATTCGACACGCTTACATTGGGCTCCTTACCACCCACTTTTCAAGGAATGAAAGTTTATACGACTGATGATAAAGAGCTGATCATGGAACCATGTATGAAGTGGGCGGGAAATCCAAACGTTACTGTTTCAGTGAAGGCATTTGGATTGAGGGCGACAGTTCAGGTGGTTGATTTGCAAGTATTTGCTATTCCACGTATAACCCTGAAGCCTTTGGTGCCGACGTTTCCTTGCTTTGCCAAAATATTTGTCTCTCTCATGGAGAAGCCCCATGTCGATTTTGGACTGAAATTGCTCGGTGCAGATGTGATGTCCATCCCAGGGCTGTATAGGTTTGTTCAGGAAATTATAAAAGACCAAGTTGCCAATATGTATCTGTGGCCTAAGACCCTCGAAGTTCCAATAATGGATCCAGCAAAAAGAAAGGATCTATTTGGGGCATCAGATCCATATTTAAAACTGAAGCTCACTGAAGACAAGCTTCCTTCGAAGAAAACAACTGTGAAACACACTAATTTGAACCCAGTATGGAATGAGGAGTTTACTTTCGTCGTGAAAGATCCCGAGTCTCAAGCTTTGGAACTGGTTCTTTACGATTGGGAGCAGGTTGGCAAGCACGATAAGATGGGAATGAACGTTGTTCCATTGAAAGAACTTACGCCCGACGAATCCAAGGAATTTACTCTCGAGGTATTGAAAAATATGGATCCTAATGATACGCAAAACGAGAAGTCGAGAGGGCAGCTTGTTGTGGAATTGTTGTACAAACCTTTCAAGGATGATGAAGCTCCAAAAGATGTTGATGAGGAGGACGCAGTACAAAAGGCTCCTGATGGAACGCCCGAAGGCGGAGGCTTGCTCGTTGTCATGATCCATCAAGCTGAAGATGTGGAAGGGAAACATCATACAAACCCCTATGTCCGGTTACTTTTCAGAGGGGAGGAGAAAAGAACTAAGCATGTTAAGAAGAACCGAGATCCAAGATGGGACGAGGAGTTTCAGTTCATGCTTGAGGAGCCGCCTGTCAACGATCGGATTCATGTGGAAGTACTCAGTGCCTCTTCAAGGATAGGCCTGCTTCACCCTAAGGAAACTTTGGGGTATGTGGACATAAACCTAGCTGATGTTGTCTCAAACAAGAGGATTAATGCGAAGTATCATCTCATCGACTCGAAGAACGGTCGTATCCAAATCGAGCTACAATGGAGAACTTCCTCATAG 1560 43.91 MGLLSSILGFFGFGLGTSIGLVVGYYMFIYFQPSDVKDPILRPLVEQDSGSLLRMMPEIPLWVKNPDYDRIDWLNKFLENMWPYLDKAICKTVKNIAKPIIAEQIPKYKIDAVEFDTLTLGSLPPTFQGMKVYTTDDKELIMEPCMKWAGNPNVTVSVKAFGLRATVQVVDLQVFAIPRITLKPLVPTFPCFAKIFVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQEIIKDQVANMYLWPKTLEVPIMDPAKRKDLFGASDPYLKLKLTEDKLPSKKTTVKHTNLNPVWNEEFTFVVKDPESQALELVLYDWEQVGKHDKMGMNVVPLKELTPDESKEFTLEVLKNMDPNDTQNEKSRGQLVVELLYKPFKDDEAPKDVDEEDAVQKAPDGTPEGGGLLVVMIHQAEDVEGKHHTNPYVRLLFRGEEKRTKHVKKNRDPRWDEEFQFMLEEPPVNDRIHVEVLSASSRIGLLHPKETLGYVDINLADVVSNKRINAKYHLIDSKNGRIQIELQWRTSS 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 96670326 96674294 + Tan0021582.1 Tan02g2840 745466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2840 519 ProSiteProfiles C2 domain profile. 225 342 IPR000008 -
Tan02g2840 519 CDD SMP_SYT 60 248 - -
Tan02g2840 519 FunFam Synaptotagmin-2 isoform A 244 390 - -
Tan02g2840 519 ProSiteProfiles C2 domain profile. 380 499 IPR000008 -
Tan02g2840 519 MobiDBLite consensus disorder prediction 374 394 - -
Tan02g2840 519 CDD C2 253 339 - -
Tan02g2840 519 Gene3D C2 domain 399 518 IPR035892 -
Tan02g2840 519 Gene3D C2 domain 244 373 IPR035892 -
Tan02g2840 519 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289(InterPro)
Tan02g2840 519 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 253 372 IPR035892 -
Tan02g2840 519 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 248 IPR039010 -
Tan02g2840 519 MobiDBLite consensus disorder prediction 374 389 - -
Tan02g2840 519 FunFam Extended synaptotagmin-2 399 517 - -
Tan02g2840 519 Pfam C2 domain 399 501 IPR000008 -
Tan02g2840 519 Pfam C2 domain 253 340 IPR000008 -
Tan02g2840 519 SMART C2_3c 399 498 IPR000008 -
Tan02g2840 519 SMART C2_3c 243 341 IPR000008 -
Tan02g2840 519 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 517 IPR045050 GO:0005783(PANTHER)|GO:0008289(InterPro)
Tan02g2840 519 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 398 516 IPR035892 -
Tan02g2840 519 PRINTS C2 domain signature 284 297 IPR000008 -
Tan02g2840 519 PRINTS C2 domain signature 257 269 IPR000008 -
Tan02g2840 519 PRINTS C2 domain signature 306 314 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2840 K28063 - - csv:101203849 981.089
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2840 Tan-Chr2:96670326 Tan05g1143 Tan-Chr5:10252780 5.10E-223 dispersed
Tan02g2840 Tan-Chr2:96670326 Tan02g0693 Tan-Chr2:6467022 1.30E-239 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1144 . . . . . . . . . Cmo12g00352 . . . Car12g00378 Sed11g1098 . Cpe07g00356 Bhi04g00131 Tan02g2840 Cmetu02g0262 . Hepe10g0165 . Lcy13g1902 Cla08g01413 Cam08g1892 Cec08g1469 Cco08g1602 Clacu08g1584 . Cre08g1367 Cone4ag1543 . Cone17ag1416 . . . . Cme03g01869 Blo17g00739 . Bda08g01211 Bda01g01538 Bpe02g01735 . . . . . . Cma12g00400 . . . . . . . . . . . . . . . . . . . Lsi08g01308 . Chy03g01373 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000733 3 5 3 2 4 3 4 3 3 2 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 4 4 2 96