Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0109 ATGTACTCCACGAATGATAAGATGGGGAACGAAAATTTGCTGCAGAGAGTTGATGACAATGCTGAAGTGAATGGTTGTTCAACTGTCGGGAATGAAGATTTGGGTTCTCAGTCTCGCCGTAGTGTAAGCAAGGAATCTGGGGCAAGTTGTCGTGTGTGTCAATGTACTGAATCTGACAGAAGAGGTGATACTGTTTTAGGATTTCTTGGCATTACTCCTCCAATAATGGAAGCAAGAAAAAATGACGCGGATTCTAAGCCTGAGAAGCAAAATGTAGAAAATGTTGTTGGTTGTTCTGTGCTGAAAAAAAATGTTAAAAGGGATTCTGGTTCAATTGAGTTCATAGGCCCTAATGGGGAGGTTTTCGTTTGCAAAGCTGATATTGAAATGGGTTCATGTCAACATGAAGATGCATTAGTGGAGCTTGGATGTTCTTGCAAGAGTGACCTTGCTCTTGTACACTATGCATGTGCTCTCAAGTGGTTTGTCAGCCACGGATCTACAGTTTGTGAAATCTGTGGATGTACTGCAGAAAATATTAGAACTGATGACTTTAGAAAAGTTGTGAGTTCTTTGAAGGAATATGAAGCTTTAAGGGAAAGAACTGTTAGTGGGGAACCTAATCCTATGCAGTCTCATACAAGTACTGGTATAGATCCTGACGCTGTTGCTGCTGTTCGCAGGCAGCGGCTTAGTGAAATCTCGTTGTGGTTTAGTCCTCATAATTATAGTAGCAACAATAACTCTACTGCAGCCTCCCAGGTTGTTTCTGAACATCTGAATACCATCTCAGAAAATGTTGTTCATGCTGAAAATCCTGCAACCAGGTGGGCTGTTGAGGGTACTGGAATTCTCCTTGCCACAGGACTGCTTACTGTTACGCTTGCTTGCCTAATAGCTCCTCGTGTGGGGAAGAAAACTGCAAAAAGTGGCCTTCACATTCTTCTTGGAGGAGTTTGTGCGTTAACAGTAGTGGTTTTCTTCCGCTTTTTTGTGCTGACCAGGATAAAATACGGACCTGCTCGATACTGGGCTATTTTGTTCGTCTTTTGGTTCCTGGTGTTTGGCATTTGGGCATCGAGGACACACAGTGCTCATACGACGTAA 1107 42.91 MYSTNDKMGNENLLQRVDDNAEVNGCSTVGNEDLGSQSRRSVSKESGASCRVCQCTESDRRGDTVLGFLGITPPIMEARKNDADSKPEKQNVENVVGCSVLKKNVKRDSGSIEFIGPNGEVFVCKADIEMGSCQHEDALVELGCSCKSDLALVHYACALKWFVSHGSTVCEICGCTAENIRTDDFRKVVSSLKEYEALRERTVSGEPNPMQSHTSTGIDPDAVAAVRRQRLSEISLWFSPHNYSSNNNSTAASQVVSEHLNTISENVVHAENPATRWAVEGTGILLATGLLTVTLACLIAPRVGKKTAKSGLHILLGGVCALTVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHSAHTT 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20003238 20019439 + Tan0006608.5 Tan03g0109 745613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0109 368 PANTHER ZINC FINGER, RING-CH-TYPE 42 357 - -
Tan03g0109 368 SMART ringv_2 133 174 IPR011016 GO:0008270(InterPro)
Tan03g0109 368 ProSiteProfiles Zinc finger RING-CH-type profile. 116 180 IPR011016 GO:0008270(InterPro)
Tan03g0109 368 Pfam RING-variant domain 135 173 IPR011016 GO:0008270(InterPro)
Tan03g0109 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 177 IPR013083 -
Tan03g0109 368 SUPERFAMILY RING/U-box 137 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0107 Tan-Chr3:20003238 Tan03g0109 Tan-Chr3:20003238 2.90E-212 dispersed
Tan03g0109 Tan-Chr3:20003238 Tan11g0240 Tan-Chr11:1928095 1.20E-08 dispersed
Tan03g0108 Tan-Chr3:20003238 Tan03g0109 Tan-Chr3:20003238 2.90E-212 tandem
Tan03g0109 Tan-Chr3:20003238 Tan03g0110 Tan-Chr3:20003238 2.90E-212 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0109 - - - 0.0