Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0173 ATGGGAGACGGCAATAACACCGGCAGAGGCCTTGTCTCGGCCAACGCCGCCGCTAATTCCAACCGGAACAACAACAACGGCAGCCACCATAAGAAGCCGGAGTGGCTGCAGCAGTACGATCTGATAGGGAAAATAGGAGAGGGAACCTATGGCCTTGTGTTCCTTGCTAAAATCAAACCCCCTTCGCCGAGTCGCGGCAAGTCCATTGCCATCAAGAAATTCAAGCAATCCAAGGATGGTGATGGCGTCTCCCCAACTGCCATCCGCGAAATTATGTTACTGCGGGAAATATCACACGAGAATGTCGTCAAGCTTGTAAATGTTCATATCAACCATGCAGATATGTCGCTGTATCTAGCTTTTGATTATGCTGAACATGACCTCTACGAAATCATTAGACATCATCGGGACAAGGCTAACCATCCCCTTAATCAGTATACCGTTAAATCCTTGCTTTGGCAACTTCTCAATGGATTGAACTATCTCCACAGTAATTGGATCATTCATCGTGATTTAAAGCCGTCAAATATTTTGGTAATGGGTGAAGGAGAAGAACAAGGAGTGGTTAAAATAGCTGATTTTGGGCTTGCAAGAATATACCAAGCTCCCTTGAAGCCATTATCTGAAAATGGAGTTGTCGTCACCATTTGGTATCGTGCACCTGAGCTTCTCCTTGGAGCAAAGCACTATACTAGTGCTGTTGATATGTGGGCTGTTGGATGTATTTTTGCTGAGCTTTTGACGTTGAAGCCATTGTTTCAAGGGCAAGAAGTCAAAGGGACTCCAAATCCTTTCCAGCTTGATCAACTCGACAAGATCTTTAAGGTTTTAGGCCATCCCACGCTAGAGAAGTGGCCAACACTTGCTAATCTTCCTCATTGGCAACAAGATTTACAGCATATACAGGGGCATAAATATGACAATGCTGGGTTGTATAATGTTGTCCACCTTTCTCCAAAAAGTCCTGCATATGATCTTCTATCCAAAATGCTCGAGTATGATCCTCGAAAGCGTATAACAGCAGCACAAGCTCTTGAGCATGAGTATTTTCGTTTAGAACCTCTGCCGGGATACAATGCTTTGGTACCAATCCAACCTGGTGAGAAGATCATTAATTATCCAACTCGCCCTGTGGACACAACCACGGATTTTGAGGGAACAACTAACCTTCAACAATCACAAACGGTAGCATCTGGAAATGCTGTAAACATGCAAGGTGCTCATACGGTGGCAGGCAGATCTGTCCCTCGGTCAATGCCAGGAGTTGGCATGCCAAGGATGCCGCCTCAGGGGATGGCTCCTTATAACCTCGCATCTCAGGCTGGGATGGGTATGAATCCCGGTGGCATCCCCATGCAGCGTGGTGTTTCTGCCCAAGCTCATCAGCAACAGTTAAGGAGAAAAGATCAAGGAATGGGAATGCCAGGTTATCCTCCACAGCAGAAGCAACAAAGACGCTACTAA 1464 46.11 MGDGNNTGRGLVSANAAANSNRNNNNGSHHKKPEWLQQYDLIGKIGEGTYGLVFLAKIKPPSPSRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKANHPLNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGQEVKGTPNPFQLDQLDKIFKVLGHPTLEKWPTLANLPHWQQDLQHIQGHKYDNAGLYNVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFRLEPLPGYNALVPIQPGEKIINYPTRPVDTTTDFEGTTNLQQSQTVASGNAVNMQGAHTVAGRSVPRSMPGVGMPRMPPQGMAPYNLASQAGMGMNPGGIPMQRGVSAQAHQQQLRRKDQGMGMPGYPPQQKQQRRY 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28907698 28936688 - Tan0012370.1 Tan03g0173 745677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0173 487 SUPERFAMILY Protein kinase-like (PK-like) 34 351 IPR011009 -
Tan03g0173 487 SMART serkin_6 39 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan03g0173 487 Gene3D Phosphorylase Kinase; domain 1 18 121 - -
Tan03g0173 487 FunFam Putative cyclin-dependent kinase E-1 124 363 - -
Tan03g0173 487 Gene3D Transferase(Phosphotransferase) domain 1 122 361 - -
Tan03g0173 487 FunFam Cyclin-dependent kinase e-1 27 123 - -
Tan03g0173 487 ProSitePatterns Protein kinases ATP-binding region signature. 45 73 IPR017441 GO:0005524(InterPro)
Tan03g0173 487 Pfam Protein kinase domain 39 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan03g0173 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan03g0173 487 MobiDBLite consensus disorder prediction 453 487 - -
Tan03g0173 487 CDD STKc_CDK8_like 38 350 - -
Tan03g0173 487 ProSiteProfiles Protein kinase domain profile. 39 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan03g0173 487 PANTHER CELL DIVISION PROTEIN KINASE 38 350 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0016592(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0173 Tan-Chr3:28907698 Tan04g0087 Tan-Chr4:630286 3.70E-66 dispersed
Tan03g0173 Tan-Chr3:28907698 Tan02g2173 Tan-Chr2:91072459 2.50E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67264 PF00069 Pkinase 1.90E-68 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0173 K02208 - csv:101203984 914.064