Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan03g0218 | ATGACAGATACAGGTGAAAATCAGCAGCCTGAACAAGACTGTAGCTTCTTCAAAAAACCCACAAAGAACAAAAACATCAGAAAGCGGACAGTTGATGAAGACGAGGAGGAGAACTCTAAAATCGAGACTTCTTTGTTGCTAAACCATAAAAAAGCCCCCAAGATTGAAAGCAAGCTCTATTTTTCTTCTGGACCCTCAAAAAGTTCCTTCACTAATGAGTCAAATGTGGAATCTGATAAACCAATTTTTCAATTTGAGTCTTCAAAAGAAATCCAAGTTCACCATGATAGTAGAGCCACTGCAACTCTAGAAACAGAAACTGAGTTCTCAAGAGATGCACGAGCCATTCGTGAGAGAGTTTTGAAGCAAGCTGAGAAGGCTTTGAAGGGTAAAGGCAAGAGTTCTGGGGGTAAGAAGTTGTATAAAGGGGCCAATGCCTATGTGGATTACAAGGCTGGCTTTAGAAGGGAACATACAATTTCAAGCGAAAAAGCTGGTGGAGCACATGGGCCACTTAGAGCATCTGCTCATATAAGAGCTTCAATAAGATTTGATTATCAGCCTGATATTTGCAAGGATTATAAAGAGACTGGTTACTGTGGTTATGGGGATGCATGTAAGTTTATGCATGACCGAGGGGATTACAAGACTGGGTGGCAGTTCCATACCTTGTCTGACCTATCTGATTGA | 690 | 41.16 | MTDTGENQQPEQDCSFFKKPTKNKNIRKRTVDEDEEENSKIETSLLLNHKKAPKIESKLYFSSGPSKSSFTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETEFSRDARAIRERVLKQAEKALKGKGKSSGGKKLYKGANAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASIRFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKTGWQFHTLSDLSD | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 32557024 | 32557873 | + | Tan0007590.1 | Tan03g0218 | 745722 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan03g0218 | 229 | Gene3D | - | 185 | 217 | - | - | |
Tan03g0218 | 229 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 186 | 211 | IPR000571 | GO:0046872(InterPro) | |
Tan03g0218 | 229 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Tan03g0218 | 229 | SMART | c3hfinal6 | 185 | 212 | IPR000571 | GO:0046872(InterPro) | |
Tan03g0218 | 229 | SUPERFAMILY | CCCH zinc finger | 184 | 217 | IPR036855 | GO:0046872(InterPro) | |
Tan03g0218 | 229 | PANTHER | ZINC FINGER PROTEIN 183 | 13 | 221 | IPR039971 | GO:0005684(PANTHER)|GO:0034247(PANTHER) | |
Tan03g0218 | 229 | MobiDBLite | consensus disorder prediction | 26 | 40 | - | - | |
Tan03g0218 | 229 | ProSiteProfiles | Zinc finger C3H1-type profile. | 185 | 213 | IPR000571 | GO:0046872(InterPro) | |
Tan03g0218 | 229 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan03g0218 | Tan-Chr3:32557024 | Tan10g1898 | Tan-Chr10:60696842 | 1.50E-118 | dispersed | |
Tan03g0217 | Tan-Chr3:32549219 | Tan03g0218 | Tan-Chr3:32557024 | 1.70E-84 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26891 | PF00642 | zf-CCCH | 4.10E-10 | CL0537 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan03g0218 | K13127 | - | csv:101221334 | 397.127 |