Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0218 ATGACAGATACAGGTGAAAATCAGCAGCCTGAACAAGACTGTAGCTTCTTCAAAAAACCCACAAAGAACAAAAACATCAGAAAGCGGACAGTTGATGAAGACGAGGAGGAGAACTCTAAAATCGAGACTTCTTTGTTGCTAAACCATAAAAAAGCCCCCAAGATTGAAAGCAAGCTCTATTTTTCTTCTGGACCCTCAAAAAGTTCCTTCACTAATGAGTCAAATGTGGAATCTGATAAACCAATTTTTCAATTTGAGTCTTCAAAAGAAATCCAAGTTCACCATGATAGTAGAGCCACTGCAACTCTAGAAACAGAAACTGAGTTCTCAAGAGATGCACGAGCCATTCGTGAGAGAGTTTTGAAGCAAGCTGAGAAGGCTTTGAAGGGTAAAGGCAAGAGTTCTGGGGGTAAGAAGTTGTATAAAGGGGCCAATGCCTATGTGGATTACAAGGCTGGCTTTAGAAGGGAACATACAATTTCAAGCGAAAAAGCTGGTGGAGCACATGGGCCACTTAGAGCATCTGCTCATATAAGAGCTTCAATAAGATTTGATTATCAGCCTGATATTTGCAAGGATTATAAAGAGACTGGTTACTGTGGTTATGGGGATGCATGTAAGTTTATGCATGACCGAGGGGATTACAAGACTGGGTGGCAGTTCCATACCTTGTCTGACCTATCTGATTGA 690 41.16 MTDTGENQQPEQDCSFFKKPTKNKNIRKRTVDEDEEENSKIETSLLLNHKKAPKIESKLYFSSGPSKSSFTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETEFSRDARAIRERVLKQAEKALKGKGKSSGGKKLYKGANAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASIRFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKTGWQFHTLSDLSD 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32557024 32557873 + Tan0007590.1 Tan03g0218 745722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0218 229 Gene3D - 185 217 - -
Tan03g0218 229 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 211 IPR000571 GO:0046872(InterPro)
Tan03g0218 229 MobiDBLite consensus disorder prediction 1 16 - -
Tan03g0218 229 SMART c3hfinal6 185 212 IPR000571 GO:0046872(InterPro)
Tan03g0218 229 SUPERFAMILY CCCH zinc finger 184 217 IPR036855 GO:0046872(InterPro)
Tan03g0218 229 PANTHER ZINC FINGER PROTEIN 183 13 221 IPR039971 GO:0005684(PANTHER)|GO:0034247(PANTHER)
Tan03g0218 229 MobiDBLite consensus disorder prediction 26 40 - -
Tan03g0218 229 ProSiteProfiles Zinc finger C3H1-type profile. 185 213 IPR000571 GO:0046872(InterPro)
Tan03g0218 229 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0218 Tan-Chr3:32557024 Tan10g1898 Tan-Chr10:60696842 1.50E-118 dispersed
Tan03g0217 Tan-Chr3:32549219 Tan03g0218 Tan-Chr3:32557024 1.70E-84 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26891 PF00642 zf-CCCH 4.10E-10 CL0537 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0218 K13127 - csv:101221334 397.127