Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0252 ATGGCGGCAGCTCAGCTCACAGGGTCTTTAATTTCAGTGAGGAACTTGCCTTCTTTCAATGGGCTTCGACCTTCTGCGGTGAAATTCGCTCCTTCTGTCGCCCATGTGAGAGTGGGGGGTCTGGCCAACAGATCTTACACTAGCTTGGTCGTCAGAGCGGCTACTGTGGTTGCTCCAAAGTACACGTCAATCAAGCCATTGGGCGACAGAGTGTTGGTGAAGATAAAGGAAGCCGAAGAGAAGACTGATGGAGGGATTTTACTTCCCACAACAGCTCAGTCAAAACCCCAAGGTGGGGAGGTTGTTGCAGTTGGAGAAGGCAAGTCAATTGGAAATACCAAAGTGGAAACTACTGTAAAGACTGGTGCACAAGTTGTGTACTCCAAGTATGCTGGAACTGAGTTAGAGTTCAATGGTTCAAAGCATCTAATTCTGAAGGAAGATGATATAGTCGGTATTCTAGAAACAGATGATGCAAAAGATCTTCAGCCCCTGAACGACAGGGTCTTGATCAAGGTTGCTGCAGCCGAGGAAAAAACAGCAGGAGGTTTGTTGCTGACAGAGGCAACCAAAGAGAAACCCTCCATCGGAATGGTGATAGCAGTTGGCCCTGGTCATCTGGACGAAGATGGCAACAGGAAACCACTTTCCATCGCAGCGGGAAATAACGTGATGTACTCGAAGTATGCTGGGAACGAGTTCAAGGGCAAAGATGGGTCTGATTACATCGCTTTGAGGGCTTCAGACGTGATTGCAGTTCTATCTTAG 768 48.05 MAAAQLTGSLISVRNLPSFNGLRPSAVKFAPSVAHVRVGGLANRSYTSLVVRAATVVAPKYTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKSIGNTKVETTVKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAAAEEKTAGGLLLTEATKEKPSIGMVIAVGPGHLDEDGNRKPLSIAAGNNVMYSKYAGNEFKGKDGSDYIALRASDVIAVLS 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38727610 38730669 + Tan0012602.2 Tan03g0252 745756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0252 255 CDD cpn10 162 254 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Tan03g0252 255 Hamap Co-chaperonin GroES [groES]. 63 155 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Tan03g0252 255 PIRSF Cpn21 1 255 IPR017416 GO:0006457(InterPro)|GO:0046914(InterPro)|GO:1901671(InterPro)
Tan03g0252 255 PANTHER 10 KDA HEAT SHOCK PROTEIN 56 252 IPR020818 GO:0005524(InterPro)|GO:0005759(PANTHER)|GO:0006457(InterPro)|GO:0009507(PANTHER)|GO:0009536(PANTHER)|GO:0044183(InterPro)|GO:0046872(PANTHER)|GO:0051082(PANTHER)|GO:0051085(PANTHER)|GO:0051087(PANTHER)
Tan03g0252 255 FunFam 20 kDa chaperonin, chloroplastic 57 156 - -
Tan03g0252 255 SMART Cpn10_2 63 154 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Tan03g0252 255 SMART Cpn10_2 161 254 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Tan03g0252 255 SUPERFAMILY GroES-like 62 155 IPR011032 -
Tan03g0252 255 Gene3D GroES chaperonin 157 255 IPR037124 GO:0006457(InterPro)
Tan03g0252 255 Gene3D GroES chaperonin 56 156 IPR037124 GO:0006457(InterPro)
Tan03g0252 255 ProSitePatterns Chaperonins cpn10 signature. 162 186 IPR018369 GO:0005524(InterPro)|GO:0006457(InterPro)
Tan03g0252 255 Hamap Co-chaperonin GroES [groES]. 161 255 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Tan03g0252 255 PRINTS 10kDa chaperonin signature 120 132 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Tan03g0252 255 PRINTS 10kDa chaperonin signature 64 79 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Tan03g0252 255 PRINTS 10kDa chaperonin signature 141 154 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Tan03g0252 255 PRINTS 10kDa chaperonin signature 86 107 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Tan03g0252 255 CDD cpn10 63 154 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Tan03g0252 255 SUPERFAMILY GroES-like 161 254 IPR011032 -
Tan03g0252 255 Pfam Chaperonin 10 Kd subunit 162 253 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Tan03g0252 255 Pfam Chaperonin 10 Kd subunit 64 153 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Tan03g0252 255 ProSitePatterns Chaperonins cpn10 signature. 64 88 IPR018369 GO:0005524(InterPro)|GO:0006457(InterPro)
Tan03g0252 255 FunFam 10 kDa chaperonin 160 255 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0251 Tan-Chr3:38727610 Tan03g0252 Tan-Chr3:38727610 1.60E-137 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0252 K04078 - csv:101212396 447.973