Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0269 ATGGCTGACCCATGTTCCAACTCATTAGCCAGTGTTCTAAAATTCAATCCCCTCCACCACCATTTCCCACCTAGCTCCCAACCATCCCCCTCTCCACCACCACAGGTGAATATGTCTCTCAATTACATCTCGTATTCCTACCTGAATCCGCCTCCGCCGTCATCTCCGCCGCTCCGCGAGGCTCTGCCGCTTCTCGGGCTGATATCTCCTCCCGAACAGCAGCAGGAGCAAGAAGAAGAGGACGACAGCGGAGGTGGCGAGGGCGACGACGGGTCAGTGACCGTGGCGCTGCACATAGGTCTACCGAGCCCTAGCGCGGCGGAGATGGCTTCTGTGATGTGTGGTTCTTCATCTGAGATTGATCATGTGGGTGAGGGAGATCATAGTAATAATAACAATAATCTTGATGATTTTGGGCAGTCTACAAAAACCCTAATAAAGGGGCAGTACTGGATCCCTACTCCTTCTCAAATCCTCATTGGTCCTACTCAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAATATGCAGATGCACATGTGGGGGCATGGCTCTCAGTACAGAAAAGGCCCCGAATCGCTCCGGGGCACGCAGCCAACGGGCATGCTACGGCTGCCTTGCTACTGCTGCGCGCCGGGGTGTCGCAACAACATCGACCACCCTCGGGCCAAGCCGCTGAAGGACTTCAGAACCCTGCAAACACACTACAAGCGCAAGCACGGGCTGAAGCCATTCATGTGTCGCAAGTGCGGTAAGGCATTCGCCGTGCGCGGGGACTGGCGAACACACGAGAAGAATTGTGGCAAGCTTTGGTATTGCATTTGTGGCTCCGATTTCAAGCACAAGCGCTCCCTCAAGGACCATGTCAAGGCCTTCGGTAACGACCACGCCGCATACGGTGGCAGCGGGATCGACGGGTTCGGAGATGAGGAGGATGAGCCTTCTTCTGAAGTCGAGCAGGATAACGGTGAGTGA 987 54.51 MADPCSNSLASVLKFNPLHHHFPPSSQPSPSPPPQVNMSLNYISYSYLNPPPPSSPPLREALPLLGLISPPEQQQEQEEEDDSGGGEGDDGSVTVALHIGLPSPSAAEMASVMCGSSSEIDHVGEGDHSNNNNNLDDFGQSTKTLIKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNDHAAYGGSGIDGFGDEEDEPSSEVEQDNGE 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 41076511 41079929 - Tan0000088.1 Tan03g0269 745773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0269 328 FunFam zinc finger protein WIP2-like 164 187 - -
Tan03g0269 328 Gene3D Classic Zinc Finger 212 302 - -
Tan03g0269 328 MobiDBLite consensus disorder prediction 71 95 - -
Tan03g0269 328 SUPERFAMILY beta-beta-alpha zinc fingers 161 187 IPR036236 -
Tan03g0269 328 ProSitePatterns Zinc finger C2H2 type domain signature. 167 187 IPR013087 -
Tan03g0269 328 SMART c2h2final6 165 187 IPR013087 -
Tan03g0269 328 SMART c2h2final6 249 269 IPR013087 -
Tan03g0269 328 Gene3D Classic Zinc Finger 164 187 - -
Tan03g0269 328 PANTHER ZINC FINGER PROTEIN WIP2 38 326 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Tan03g0269 328 FunFam Zinc finger protein WIP2 218 300 - -
Tan03g0269 328 MobiDBLite consensus disorder prediction 310 328 - -
Tan03g0269 328 Pfam Zinc finger, C2H2 type 165 184 IPR013087 -
Tan03g0269 328 SUPERFAMILY beta-beta-alpha zinc fingers 234 269 IPR036236 -
Tan03g0269 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 192 IPR013087 -
Tan03g0269 328 MobiDBLite consensus disorder prediction 302 328 - -
Tan03g0269 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 249 269 IPR013087 -
Tan03g0269 328 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 248 272 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0269 Tan-Chr3:41076511 Tan08g1447 Tan-Chr8:59219365 1.60E-100 dispersed
Tan03g0269 Tan-Chr3:41076511 Tan07g0737 Tan-Chr7:11750849 9.10E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26893 None None None None Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0269 - - - 0.0