Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0359 ATGGAGGTCGATGCTAATTCTGGGAAGTCGTCGAAACAAATTGGGGGCGGCCAGGTTTGTCAGATCTGTAGCGATTCCGTCGGCACGACGGCCGACGGCGAGCCGTTTGTTGCATGTGATGTTTGTGCATTTCCGGTTTGCCGTCCTTGTTACGAGTACGAGAGGAAAGATGGGAATCAGTCTTGCCCTCAATGCAAGACCAAATACAAGTGGCATAAAGGAAGTCCTCCGGTTAATGGAGAAGCTGTGGAAGATGGGGATGGTAATGGAGTAGCAGGGGCACAAGAAAGGCACCATAAGTTACCCGAGCGCACTCTTAGCTGGGATACTAATTATGATAAGGAGGGATCTTTTAATCACATTCCTTTGCTCACCACTGGACGATCTGTTTCCGGTGAACTGTCGGCTGCATCTCCTGAGCGGCTCTCCATGGCATCTCCTGAAAGCGGGAGCAGGGCTAACTATAGAATTATGGATCAATCGAGAGATTCGGGATCGGCTAGGTTTGGTAATGTGGCATGGAAAGAGAGAATAGATAGTTGGAAAGTGAAGCAGGACAAGAGTGTGCCTCCAATGAGTGTCAGTCATGCACCTTCTGAAGGGAGGGGTGGTGCTGATTTTGATGCCAGCACTGATGTTGTGATCGATGATTCTTTGTTAAATGATGAAGCCCGCCAGCCTCTTTCGAGGAAGGTTTCTATTCCATCCTCTAGGATTAACCCTTATAGGATGGTCATAGTTCTGCGGCTTGTTATTCTTTCCATATTCTTGCACTACCGGATTACAAATCCAGTTCCCAATGCCTTTGCTCTGTGGTTAATATCTGTGATTTGTGAGATATGGTTTGCTATATCTTGGATTTTGGATCAGTTTCCCAAATGGCTCCCAGTCAATCGTGAGACATATCTTGATAGGCTTGCTCTACGATATGATCGTGAAGGAGAGCCATCTCAGTTGGCTGCTGTGGACATATTTGTCAGTACTGTCGACCCTCTGAAAGAGCCTCCTCTTGTCACAGCCAATACGGTCCTATCAATTCTCTCTGTGGACTATCCAGTCGATAAAGTTTCTTGCTATGTATCAGATGATGGAGCTGCTATGTTAACATTTGAAGCATTGTCTGAAACATCAGAATTTGCAAGAAAATGGGTTCCTTTCTGCAAGAAGTACAGCCTTGAGCCACGAGCACCGGAGTGGTATTTTGCTCAGAAGATTGATTACTTAAAGGACAAGGTTCATCCATCATTTGTGAAGGAGCGGCGAGCAATGAAGAGAGAATATGAGGAGTTTAAAATTCGTGTCAATGGACTTGTTGCTAAGGCACAGAAAGTTCCTGATGAAGGGTGGGTCATGCAAGATGGTACACCATGGCCTGGAAACAACACTAGAGATCATCCCGGAATGATTCAGGTGTTCTTAGGGCACAGTGGAGGACTTGATACTGAGGGTAATGAGCTCCCACGTTTAGTTTACGTTTCTCGTGAGAAGCGTCCTGGTTTCCAACATCACAAAAAGGCTGGTGCTATGAATGCACTTGTTCGTGTATCTGCTGTTCTTACCAATGGACCCTTCTTGTTAAATCTTGATTGTGATCACTACATAAACAACAGTAAAGCGTTGCGGGAAGCTATGTGTTTTCTGATGGATCCTAATCTTGGAAAATCAGTGTGCTATGTTCAGTTTCCCCAGAGGTTTGATGGGATTGATAGAAATGATCGATACGCCAATCGTAACACTGTTTTCTTTGATATCAATCTTCGAGGCTTGGATGGCATCCAAGGTCCGGTTTATGTGGGAACGGGATGTGTTTTCAATCGAACTGCACTGTACGGCTATGAACCCCCTCTCAAGCCTAAGCATAAAAAAGCAGGGCTCTTCTCCAGTTGCTTCGGGAAGTCAAAAACGAAAAGTTCTAAATCGAAAAGGAAGGATTCTGATAAAAAGCAAACAAATAAAAATGTCGATCCCACCGTGCCAATATTCAACCTTGAGGATATTGAGGAAGGAGTTGAAGGTGCCGGGTTTGATGACGAGAAATCGCTACTAATGTCACAAATGAGCCTGGAGAAGAGGTTTGGTCAATCGGCTGTATTTGTTGCTTCCACACTAATGGAGAATGGTGGTGTGCCGCAGTCTGCCACTCCGGAATCTCTCCTTAAAGAAGCAATTCATGTCATCAGTTGTGGATACGAGGACAAAACAGACTGGGGAAGTGAAATTGGATGGATCTATGGTTCTGTCACAGAAGATATTTTGACAGGGTTCAAGATGCACGCTCGTGGTTGGAGATCAATCTATTGCATACCAGACCGTCCTGCATTTAAAGGATCTGCTCCTATTAATCTTTCCGATCGTCTAAACCAAGTGCTTCGGTGGGCATTAGGTTCGGTTGAAATTCTTTTCAGTCGGCATTGTCCTATGTGGTATGGTTATGGTGGACGGCTGAAATGGCTCGAGAGATTTGCTTATGTTAACACCACCATTTACCCAATTACATCCATTCCTCTTCTTGCCTATTGTACCTTACCTGCAATATGTCTGCTCACCGGAAAGTTCATTATTCCTCAGATTAGCAATCTTGCCAGTATTTGGTTCATTTCTCTCTTTCTTTCCATCTTTGCCACTGGTATTCTGGAAATGAGATGGAGTGGTGTCGGAATCGATGAATGGTGGAGAAACGAGCAGTTCTGGGTTATTGGAGGTGTGTCGGCTCATCTGTTTGCTGTTTTCCAAGGTCTGCTTAAAGTTCTTGCTGGAATCGATACCAACTTTACTGTTACTTCGAAAGCATCCGATGAAGATGGAGATTTTGCTGAGCTCTACATGTTCAAGTGGACCACTCTTCTCATTCCCCCAACCACTCTCCTAATTATCAACATAGTTGGAGTTGTTGCTGGAATTTCTTATGCCATCAACAGCGGCTATCAATCTTGGGGTCCCCTTTTCGGAAAACTTTTCTTTGCTTTCTGGGTGATTATTCATCTGTATCCCTTCCTCAAGGGTCTGATGGGTCGACAGAATCGAACTCCCACGATTGTGGTTGTATGGTCCATCCTCCTTGCATCAATCTTCTCCCTTTTATGGGTTCGGATCGATCCCTTCACCACCCGGGTAACTGGTCCCGACGTCGAACAGTGTGGAATCAACTGCTAA 3153 45.1 MEVDANSGKSSKQIGGGQVCQICSDSVGTTADGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKWHKGSPPVNGEAVEDGDGNGVAGAQERHHKLPERTLSWDTNYDKEGSFNHIPLLTTGRSVSGELSAASPERLSMASPESGSRANYRIMDQSRDSGSARFGNVAWKERIDSWKVKQDKSVPPMSVSHAPSEGRGGADFDASTDVVIDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILSIFLHYRITNPVPNAFALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYSLEPRAPEWYFAQKIDYLKDKVHPSFVKERRAMKREYEEFKIRVNGLVAKAQKVPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKAGLFSSCFGKSKTKSSKSKRKDSDKKQTNKNVDPTVPIFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCIPDRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPMWYGYGGRLKWLERFAYVNTTIYPITSIPLLAYCTLPAICLLTGKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINIVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1050
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 51856717 51863206 - Tan0002977.1 Tan03g0359 745863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0359 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 93 IPR013083 -
Tan03g0359 1050 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 440 613 IPR029044 -
Tan03g0359 1050 ProSiteProfiles Zinc finger RING-type profile. 20 66 IPR001841 -
Tan03g0359 1050 Pfam Cellulose synthase 322 1043 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Tan03g0359 1050 CDD mRING-HC-C4C4_CesA 18 68 - -
Tan03g0359 1050 Pfam Zinc-binding RING-finger 16 86 IPR027934 -
Tan03g0359 1050 SUPERFAMILY RING/U-box 8 87 - -
Tan03g0359 1050 MobiDBLite consensus disorder prediction 632 655 - -
Tan03g0359 1050 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 230 1019 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Tan03g0359 1050 SUPERFAMILY Nucleotide-diphospho-sugar transferases 336 851 IPR029044 -
Tan03g0359 1050 FunFam Cellulose synthase 439 613 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0359 Tan-Chr3:51856717 Tan06g0578 Tan-Chr6:4432734 0.00E+00 dispersed
Tan03g0359 Tan-Chr3:51856717 Tan05g0894 Tan-Chr5:7188981 1.80E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0359 K10999 - csv:101211779 2097.78