Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0361 ATGGGAACTCCGGAATTCCCTAATCTCGGAAAGCATTGCAGCGTTGAAGATTGTAAGCAGATCGATTTCTTGCCCTTTACTTGCGATTGTTGTCACCAGGTATTCTGTTTGGAGCATCGTAGCTACAATAGGCATAGTTGTCCAAAAGCGGATAGGCGGGATGTCACTGTTGTCATTTGTCCGCTGTGTGCCAAAGGAGTTCGTCTCATTCCAGATCAAGACCCGAACATTACTTGGGAGATGCATGTAAACACGGAATGTGACCCTTCAAATTATGATAAAGTCACAAAGAAGAAAAAATGCCCCGTTCCTGGCTGCAGGGAGTTGTTAACATTTTCAAATACGATCAAGTGCCGGGACTGCTTGGTAGACCATTGTTTGAAGCACCGTTTCGGACCCGACCATAAGTGTTCTGGACCCAAAAAACCAGAAGCAGCAGGTTTTCCATTTGTTGGTCTTCTAAGTAGAAGTAGAAAAGAAGAGAAAGGCCCTAAGAAAGCATTGCCCACCACATCTTCCTCTAGGTGGACAACAACCCTCCTTAATGCAGCCTCATCTGTTAAAGCCTCAGCCGAGGCAAGCATGACGAAGTTGTCGAATGAAATCAGTAACGCTTGGAAAACCTCAGGCAGCAGCAACAGCAGCAACGGAAGTGCAAATGGACAAGTTGAGCAATGTCCACAATGTGGTACTAAGTTTTCGTCGGTTTCATCATTAATAGACCATGTTGAAACAGTCCATGAAAAGGGTGGCAATCGACCTGGGGCAAAGAAGGTAGTAATCGATGCTTGTCCGAAGTGTAGCAGAGGATTTGTTGATCCTGTTGCCCTCGTGGAGCATATTGAGAGGGATCATGGTGGTACTTCAAGAGCTTGA 876 45.78 MGTPEFPNLGKHCSVEDCKQIDFLPFTCDCCHQVFCLEHRSYNRHSCPKADRRDVTVVICPLCAKGVRLIPDQDPNITWEMHVNTECDPSNYDKVTKKKKCPVPGCRELLTFSNTIKCRDCLVDHCLKHRFGPDHKCSGPKKPEAAGFPFVGLLSRSRKEEKGPKKALPTTSSSRWTTTLLNAASSVKASAEASMTKLSNEISNAWKTSGSSNSSNGSANGQVEQCPQCGTKFSSVSSLIDHVETVHEKGGNRPGAKKVVIDACPKCSRGFVDPVALVEHIERDHGGTSRA 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 51972163 51975099 + Tan0006601.1 Tan03g0361 745865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0361 291 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 255 - GO:0005737(PANTHER)
Tan03g0361 291 ProSitePatterns Zinc finger C2H2 type domain signature. 264 285 IPR013087 -
Tan03g0361 291 Pfam C2H2-type zinc finger 225 247 - -
Tan03g0361 291 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270(InterPro)
Tan03g0361 291 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270(InterPro)
Tan03g0361 291 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270(InterPro)
Tan03g0361 291 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270(InterPro)
Tan03g0361 291 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270(InterPro)
Tan03g0361 291 Gene3D - 2 58 IPR035896 -
Tan03g0361 291 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Tan03g0361 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 247 IPR013087 -
Tan03g0361 291 SUPERFAMILY AN1-like Zinc finger 93 145 IPR035896 -
Tan03g0361 291 SMART c2h2final6 99 129 IPR013087 -
Tan03g0361 291 SMART c2h2final6 262 285 IPR013087 -
Tan03g0361 291 SMART c2h2final6 224 247 IPR013087 -
Tan03g0361 291 Gene3D - 80 147 IPR035896 -
Tan03g0361 291 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270(InterPro)
Tan03g0361 291 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Tan03g0361 291 Gene3D Classic Zinc Finger 188 290 - -
Tan03g0361 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 290 IPR013087 -
Tan03g0361 291 ProSitePatterns Zinc finger C2H2 type domain signature. 226 247 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0361 Tan-Chr3:51972163 Tan07g1309 Tan-Chr7:60950908 5.00E-34 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26895 PF01428 zf-AN1 1.50E-07 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0361 - - - 0.0