Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan03g0361 | ATGGGAACTCCGGAATTCCCTAATCTCGGAAAGCATTGCAGCGTTGAAGATTGTAAGCAGATCGATTTCTTGCCCTTTACTTGCGATTGTTGTCACCAGGTATTCTGTTTGGAGCATCGTAGCTACAATAGGCATAGTTGTCCAAAAGCGGATAGGCGGGATGTCACTGTTGTCATTTGTCCGCTGTGTGCCAAAGGAGTTCGTCTCATTCCAGATCAAGACCCGAACATTACTTGGGAGATGCATGTAAACACGGAATGTGACCCTTCAAATTATGATAAAGTCACAAAGAAGAAAAAATGCCCCGTTCCTGGCTGCAGGGAGTTGTTAACATTTTCAAATACGATCAAGTGCCGGGACTGCTTGGTAGACCATTGTTTGAAGCACCGTTTCGGACCCGACCATAAGTGTTCTGGACCCAAAAAACCAGAAGCAGCAGGTTTTCCATTTGTTGGTCTTCTAAGTAGAAGTAGAAAAGAAGAGAAAGGCCCTAAGAAAGCATTGCCCACCACATCTTCCTCTAGGTGGACAACAACCCTCCTTAATGCAGCCTCATCTGTTAAAGCCTCAGCCGAGGCAAGCATGACGAAGTTGTCGAATGAAATCAGTAACGCTTGGAAAACCTCAGGCAGCAGCAACAGCAGCAACGGAAGTGCAAATGGACAAGTTGAGCAATGTCCACAATGTGGTACTAAGTTTTCGTCGGTTTCATCATTAATAGACCATGTTGAAACAGTCCATGAAAAGGGTGGCAATCGACCTGGGGCAAAGAAGGTAGTAATCGATGCTTGTCCGAAGTGTAGCAGAGGATTTGTTGATCCTGTTGCCCTCGTGGAGCATATTGAGAGGGATCATGGTGGTACTTCAAGAGCTTGA | 876 | 45.78 | MGTPEFPNLGKHCSVEDCKQIDFLPFTCDCCHQVFCLEHRSYNRHSCPKADRRDVTVVICPLCAKGVRLIPDQDPNITWEMHVNTECDPSNYDKVTKKKKCPVPGCRELLTFSNTIKCRDCLVDHCLKHRFGPDHKCSGPKKPEAAGFPFVGLLSRSRKEEKGPKKALPTTSSSRWTTTLLNAASSVKASAEASMTKLSNEISNAWKTSGSSNSSNGSANGQVEQCPQCGTKFSSVSSLIDHVETVHEKGGNRPGAKKVVIDACPKCSRGFVDPVALVEHIERDHGGTSRA | 291 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 51972163 | 51975099 | + | Tan0006601.1 | Tan03g0361 | 745865 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan03g0361 | 291 | PANTHER | ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED | 5 | 255 | - | GO:0005737(PANTHER) | |
Tan03g0361 | 291 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 264 | 285 | IPR013087 | - | |
Tan03g0361 | 291 | Pfam | C2H2-type zinc finger | 225 | 247 | - | - | |
Tan03g0361 | 291 | ProSiteProfiles | Zinc finger AN1-type profile. | 7 | 55 | IPR000058 | GO:0008270(InterPro) | |
Tan03g0361 | 291 | SMART | AN1_Zf_4 | 13 | 52 | IPR000058 | GO:0008270(InterPro) | |
Tan03g0361 | 291 | SMART | AN1_Zf_4 | 101 | 142 | IPR000058 | GO:0008270(InterPro) | |
Tan03g0361 | 291 | Pfam | AN1-like Zinc finger | 101 | 141 | IPR000058 | GO:0008270(InterPro) | |
Tan03g0361 | 291 | Pfam | AN1-like Zinc finger | 13 | 51 | IPR000058 | GO:0008270(InterPro) | |
Tan03g0361 | 291 | Gene3D | - | 2 | 58 | IPR035896 | - | |
Tan03g0361 | 291 | FunFam | AN1-type zinc finger protein 2B isoform X1 | 3 | 64 | - | - | |
Tan03g0361 | 291 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 224 | 247 | IPR013087 | - | |
Tan03g0361 | 291 | SUPERFAMILY | AN1-like Zinc finger | 93 | 145 | IPR035896 | - | |
Tan03g0361 | 291 | SMART | c2h2final6 | 99 | 129 | IPR013087 | - | |
Tan03g0361 | 291 | SMART | c2h2final6 | 262 | 285 | IPR013087 | - | |
Tan03g0361 | 291 | SMART | c2h2final6 | 224 | 247 | IPR013087 | - | |
Tan03g0361 | 291 | Gene3D | - | 80 | 147 | IPR035896 | - | |
Tan03g0361 | 291 | ProSiteProfiles | Zinc finger AN1-type profile. | 95 | 145 | IPR000058 | GO:0008270(InterPro) | |
Tan03g0361 | 291 | SUPERFAMILY | AN1-like Zinc finger | 4 | 59 | IPR035896 | - | |
Tan03g0361 | 291 | Gene3D | Classic Zinc Finger | 188 | 290 | - | - | |
Tan03g0361 | 291 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 262 | 290 | IPR013087 | - | |
Tan03g0361 | 291 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 226 | 247 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan03g0361 | Tan-Chr3:51972163 | Tan07g1309 | Tan-Chr7:60950908 | 5.00E-34 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26895 | PF01428 | zf-AN1 | 1.50E-07 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan03g0361 | - | - | - | 0.0 |