Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0466 ATGGGGTCTTCCGTTGCTGCAATGGGCATGGTTTCCGACTCCAAATTCCATGTTCTTGCTGTGGATGACAGCGTCATCGATAGGAAATTGATTGAAAGGCTCCTTAAAACCTCCTCTTATCAAGTCACTACGGTTGATTCTGGGAGTAAGGCTTTGGAGTTTTTGGGGTATGACCCAGGAAATAACTCGATTCCTTCTGTTTCGCCTAACCATCATCATCACCATCAGGAAATGGATGTGAATCTTGTGATTACCGATTACTGTATGCCTGGGATGACTGGCTATGATTTGTTGAAGAAGATCAAGGGGTCTAAGGCTCTGAGAAACATTCCTGTTGTTATTATGTCATCTGAGAATGTACCTGCAAGAATCAATAGATGTTTAGAAGAAGGAGCAGAAGAATTCTTCTTGAAACCGGTCCGACTTTCGGATGTCAACAGACTTAGACCCCACATGTTGAAAACCAAAATCAAATGTGACGAACCAGAAAGAACAGAAGAAGATGAGCCTGATTCAGGAAGCCAATTCCAAGTACTAGAGCAGCAACAGCAACAGCAGCAGCACCAACAACATCAACAAGAACAATTACGATTGCAACCACAACCGCAGCAGGTCCCGACACCGCTGCAAGACCAAGATCAATTGCAATCCGTACCACTGCTGCAACCACCGCAACAGGAGCAAGAACAGTTGCAATTACTCCCGCCAACACCGCCACAGCAATCGAACAACAACAAGAGGAAGGCAATGGAAGATGGACTTTCACCAGATAGAACAAGGCCTAGATACAATGGTATTACAACCATGGTGTAG 813 44.9 MGSSVAAMGMVSDSKFHVLAVDDSVIDRKLIERLLKTSSYQVTTVDSGSKALEFLGYDPGNNSIPSVSPNHHHHHQEMDVNLVITDYCMPGMTGYDLLKKIKGSKALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLSDVNRLRPHMLKTKIKCDEPERTEEDEPDSGSQFQVLEQQQQQQQHQQHQQEQLRLQPQPQQVPTPLQDQDQLQSVPLLQPPQQEQEQLQLLPPTPPQQSNNNKRKAMEDGLSPDRTRPRYNGITTMV 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 56768163 56769633 - Tan0012052.1 Tan03g0466 745970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0466 270 ProSiteProfiles Response regulatory domain profile. 17 153 IPR001789 GO:0000160(InterPro)
Tan03g0466 270 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 210 IPR045279 GO:0009736(InterPro)
Tan03g0466 270 SMART REC_2 16 149 IPR001789 GO:0000160(InterPro)
Tan03g0466 270 Coils Coil 179 199 - -
Tan03g0466 270 MobiDBLite consensus disorder prediction 158 270 - -
Tan03g0466 270 CDD REC_typeA_ARR 18 148 - -
Tan03g0466 270 Gene3D - 17 256 - -
Tan03g0466 270 Pfam Response regulator receiver domain 74 144 IPR001789 GO:0000160(InterPro)
Tan03g0466 270 MobiDBLite consensus disorder prediction 172 249 - -
Tan03g0466 270 SUPERFAMILY CheY-like 14 165 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0466 Tan-Chr3:56768163 Tan08g1252 Tan-Chr8:38118784 7.60E-61 dispersed
Tan03g0466 Tan-Chr3:56768163 Tan09g2194 Tan-Chr9:71968697 3.30E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26901 PF00072 Response_reg 2.90E-19 CL0304 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0466 K14492 - csv:101220999 317.775