Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan03g0518 | ATGAGGGAAGAACACTCCAATTGGTTCTCGAGATGGGAAGAGGAGCTTCCATCTCCGGATGAATTGATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTAGCTTTGGCTTTTGATATTCAAAATCCCACCAATAGCAGTCCGCCGTTGCCTTGCCCCTCTCCGCCGCTTTCGAATCCCCTCCCCGGCTCCGGCAACGGAATTGCGCCACCCAACTCGGCGGATTTCGGTGATTCTGCCGATTTGGGCTCTGGCGCCGCCAGCGACGAGCCCGCCCGGACCCTCAAGCGGCCGCGCCTAGTCTGGACTCCACAGCTCCACAAGCGGTTCGTTGACGCCGTTGCCCATTTGGGGATCAAAAATGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGCTTGACCAGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGTCTCTATCTCAAGCGTATGCAGGGCTTGTCCGGCGGCGGCGGGGGCGCCGCCGCCGCTGGCTTGGTTGCTTCCTCCGATCCCGCCACTGACCATTTGTTCGCTAGCTCCCCTGTTCCACCCCATTTGCTTCACTCTGCTCGTGCCAGTTCAGACCATTTCTTGCCCTTTGTTCCCATGGCCACTCTTCAGCAGCACCACCATCACCAGCAGCAGATGGCTGCTGCTGCTGCTGTCGTTGCCCACCCACAGCTCCAGCCCCCATATCATCGGCAGGTCGGGCATTTCGGGTCGCCGCCAAATGGACAGTTTGAGCATCCATTCTTAGCTAGACAGTCCCAACCTATCCATAGAATGGGGGCACCAGTGCATAATTCAGTTCCTAATTATATTGAGGAGTTGGAATCAGCCAATGCCAGTGGTGGAAGAAAAGTCCTCACCTTATTTCCTACTGGGGATGATTGA | 909 | 56.0 | MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPTNSSPPLPCPSPPLSNPLPGSGNGIAPPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGGAAAAGLVASSDPATDHLFASSPVPPHLLHSARASSDHFLPFVPMATLQQHHHHQQQMAAAAAVVAHPQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGAPVHNSVPNYIEELESANASGGRKVLTLFPTGDD | 302 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 59473858 | 59475753 | - | Tan0020313.1 | Tan03g0518 | 746022 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan03g0518 | 302 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 98 | 150 | IPR006447 | GO:0003677(InterPro) | |
| Tan03g0518 | 302 | Gene3D | - | 94 | 156 | - | - | |
| Tan03g0518 | 302 | MobiDBLite | consensus disorder prediction | 1 | 91 | - | - | |
| Tan03g0518 | 302 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Tan03g0518 | 302 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 102 | 153 | IPR017930 | - | |
| Tan03g0518 | 302 | FunFam | Two-component response regulator | 93 | 156 | - | - | |
| Tan03g0518 | 302 | Pfam | Myb-like DNA-binding domain | 100 | 149 | IPR001005 | - | |
| Tan03g0518 | 302 | MobiDBLite | consensus disorder prediction | 46 | 60 | - | - | |
| Tan03g0518 | 302 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 5 | 262 | IPR044841 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Tan03g0518 | 302 | SUPERFAMILY | Homeodomain-like | 94 | 154 | IPR009057 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan03g0518 | Tan-Chr3:59473858 | Tan05g0421 | Tan-Chr5:2964264 | 1.80E-26 | dispersed | |
| Tan03g0518 | Tan-Chr3:59473858 | Tan08g1295 | Tan-Chr8:45121274 | 5.60E-105 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 26906 | PF00249 | Myb_DNA-binding | 2.20E-08 | CL0123 | Tan | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan03g0518 | - | - | - | 0.0 |