Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0518 ATGAGGGAAGAACACTCCAATTGGTTCTCGAGATGGGAAGAGGAGCTTCCATCTCCGGATGAATTGATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTAGCTTTGGCTTTTGATATTCAAAATCCCACCAATAGCAGTCCGCCGTTGCCTTGCCCCTCTCCGCCGCTTTCGAATCCCCTCCCCGGCTCCGGCAACGGAATTGCGCCACCCAACTCGGCGGATTTCGGTGATTCTGCCGATTTGGGCTCTGGCGCCGCCAGCGACGAGCCCGCCCGGACCCTCAAGCGGCCGCGCCTAGTCTGGACTCCACAGCTCCACAAGCGGTTCGTTGACGCCGTTGCCCATTTGGGGATCAAAAATGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGCTTGACCAGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGTCTCTATCTCAAGCGTATGCAGGGCTTGTCCGGCGGCGGCGGGGGCGCCGCCGCCGCTGGCTTGGTTGCTTCCTCCGATCCCGCCACTGACCATTTGTTCGCTAGCTCCCCTGTTCCACCCCATTTGCTTCACTCTGCTCGTGCCAGTTCAGACCATTTCTTGCCCTTTGTTCCCATGGCCACTCTTCAGCAGCACCACCATCACCAGCAGCAGATGGCTGCTGCTGCTGCTGTCGTTGCCCACCCACAGCTCCAGCCCCCATATCATCGGCAGGTCGGGCATTTCGGGTCGCCGCCAAATGGACAGTTTGAGCATCCATTCTTAGCTAGACAGTCCCAACCTATCCATAGAATGGGGGCACCAGTGCATAATTCAGTTCCTAATTATATTGAGGAGTTGGAATCAGCCAATGCCAGTGGTGGAAGAAAAGTCCTCACCTTATTTCCTACTGGGGATGATTGA 909 56.0 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPTNSSPPLPCPSPPLSNPLPGSGNGIAPPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGGAAAAGLVASSDPATDHLFASSPVPPHLLHSARASSDHFLPFVPMATLQQHHHHQQQMAAAAAVVAHPQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGAPVHNSVPNYIEELESANASGGRKVLTLFPTGDD 302
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 59473858 59475753 - Tan0020313.1 Tan03g0518 746022
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0518 302 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677(InterPro)
Tan03g0518 302 Gene3D - 94 156 - -
Tan03g0518 302 MobiDBLite consensus disorder prediction 1 91 - -
Tan03g0518 302 MobiDBLite consensus disorder prediction 1 18 - -
Tan03g0518 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Tan03g0518 302 FunFam Two-component response regulator 93 156 - -
Tan03g0518 302 Pfam Myb-like DNA-binding domain 100 149 IPR001005 -
Tan03g0518 302 MobiDBLite consensus disorder prediction 46 60 - -
Tan03g0518 302 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 5 262 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g0518 302 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0518 Tan-Chr3:59473858 Tan05g0421 Tan-Chr5:2964264 1.80E-26 dispersed
Tan03g0518 Tan-Chr3:59473858 Tan08g1295 Tan-Chr8:45121274 5.60E-105 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26906 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Tan TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0518 - - - 0.0