Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0519 ATGCGATTGGATCTAATGCAGAATCAAGTACCTGTTAGTGTAGATGGGGCTGCTCCCATTCTTGATGGTGGTCTTGTGGCTGTTAAGAAACCAGGAGCTCCCAAGCCAGCACCGAAGAAAGTTGCAGCCAAGCCAAAAGCAGAGGTGATCGAGATAAGCCCGGATACTGTCGAACAAGATCGGGGCAAGGAAGCCAAATGTGCTAACAAGAAAAAGGAAGAAGAAGGGCCCTCAAAGAAGAAGGCTCAGACTACTCTCACTTCAGTCCTGACTGCTAGAAGCAAGGCTGCTTGTGGTATCACCAAGAAGCCCAAAGAACAGATTTTTGACATTGATGCTGCAGATGTTGGAAATGAGTTGGCAGCAGTGGAATATGTTGAGGACATTTACAAGTTCTATAAGGAAGTTGAGAATGAGAATAGGCCTCATGATTATATGGATTCACAACCTGAGATCAACATTTCAATGAGGGCGATTTTGGTGGATTGGCTGGTTGATGTCCACAGCAAGTTTGAACTTTCACCCGAAACATTCTACCTCACGATCAATATAATCGATCGATTCCTTGCGACAAAGGTGGTTCCAAGAAGGGAATTGCAGTTGGTGGGTATTGGGGCAATGCTCATAGCCTCCAAATACGAAGAGATTTGGGCACCAGAGGTAAATGACTTCGTGTGTCTTTCAGATAGAGCTTACACTAATGAACAAATACTAGTGATGGAGAAAAAGATACTTGGCAAGCTGGAATGGACCTTGACTGTGCCTACACTGTATGTATTCCTGGCTCGATTCATCAAGGCGTCGAAGGACTCCGATCACGAGATGGAAAGTCTGGTTTATTTTCTGGCTGAACTTGGCACAATGCATTACAACACCTCAATAATGTACTGCCCATCGATGATTGCCGCCTCGGCAGTCTACGCGGCTCGATGCACGCTGAAGAAAACCCCTGCTTGGGATGACACCCTCAAACTCCACACTGGTTTCTCAGAGCCTCAACTAATTGATTGTGCAAAACTTCTGGTGGGATTCCATGGGGTAGCAAGCAAGAACAAGCTCCAAGTAACATACCGAAAGTACTCGAGCTCCGCGCAGGGAGCGGTAGCTTTGCTTCAGCCAGCCAAAGCTCTGTTGGCTGCTGCCCATTGA 1149 46.74 MRLDLMQNQVPVSVDGAAPILDGGLVAVKKPGAPKPAPKKVAAKPKAEVIEISPDTVEQDRGKEAKCANKKKEEEGPSKKKAQTTLTSVLTARSKAACGITKKPKEQIFDIDAADVGNELAAVEYVEDIYKFYKEVENENRPHDYMDSQPEINISMRAILVDWLVDVHSKFELSPETFYLTINIIDRFLATKVVPRRELQLVGIGAMLIASKYEEIWAPEVNDFVCLSDRAYTNEQILVMEKKILGKLEWTLTVPTLYVFLARFIKASKDSDHEMESLVYFLAELGTMHYNTSIMYCPSMIAASAVYAARCTLKKTPAWDDTLKLHTGFSEPQLIDCAKLLVGFHGVASKNKLQVTYRKYSSSAQGAVALLQPAKALLAAAH 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 59500438 59502123 - Tan0019586.1 Tan03g0519 746023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0519 382 MobiDBLite consensus disorder prediction 53 85 - -
Tan03g0519 382 SUPERFAMILY Cyclin-like 117 252 IPR036915 -
Tan03g0519 382 Pfam Cyclin, N-terminal domain 128 252 IPR006671 -
Tan03g0519 382 Pfam Cyclin, C-terminal domain 255 373 IPR004367 -
Tan03g0519 382 PIRSF Cyclin_A_B_D_E 6 382 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Tan03g0519 382 PANTHER CYCLINS 103 361 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Tan03g0519 382 SMART Cyclin_C_2 255 374 IPR004367 -
Tan03g0519 382 FunFam G2/mitotic-specific cyclin-1 243 369 - -
Tan03g0519 382 Gene3D - 128 369 - -
Tan03g0519 382 SUPERFAMILY Cyclin-like 254 375 IPR036915 -
Tan03g0519 382 ProSitePatterns Cyclins signature. 157 188 IPR048258 -
Tan03g0519 382 CDD CYCLIN_AtCycB-like_rpt1 105 250 - -
Tan03g0519 382 SMART cyclin_7 162 246 IPR013763 -
Tan03g0519 382 SMART cyclin_7 259 343 IPR013763 -
Tan03g0519 382 MobiDBLite consensus disorder prediction 53 80 - -
Tan03g0519 382 Gene3D - 142 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0519 Tan-Chr3:59500438 Tan03g0521 Tan-Chr3:59516029 6.90E-201 dispersed
Tan03g0519 Tan-Chr3:59500438 Tan03g0520 Tan-Chr3:59500438 2.10E-210 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0519 K21777 - csv:101217210 588.571