Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0520 ATGGCTTCAAGACCAGTAGTTCCCCAACAAATCAGAGGTGAGGCGGCGATCGGCGTAGGAAAGCAGGTGAAGGGTGGGGCGGCGGTGGATGCGAGGAACCGCCGAGCGTTGGGCGATATTGGGAATTTGGTAACTGTTCGAGGAATTGACGCAAAGGCAAATCGCCCTATTACAAGGAGTTTCTGTGCTCAGTTGCTTGCCAATGCCCAAGCTGCTGCAAAAGCTGAAAATAATAAGAATCAAGTACCTGTTAGTGTAGATGGGGCTGCTCCCATTCTTGATGGTGGTCTTGTGGCTGTTAAGAAACCAGGAGCTCCCAAGCCAGCACCGAAGAAAGTTGCAGCCAAGCCAAAAGCAGAGGTGATCGAGATAAGCCCGGATACTGTCGAACAAGATCGGGGCAAGGAAGCCAAATGTGCTAACAAGAAAAAGGAAGAAGAAGGGCCCTCAAAGAAGAAGGCTCAGACTACTCTCACTTCAGTCCTGACTGCTAGAAGCAAGGCTGCTTGTGGTATCACCAAGAAGCCCAAAGAACAGATTTTTGACATTGATGCTGCAGATGTTGGAAATGAGTTGGCAGCAGTGGAATATGTTGAGGACATTTACAAGTTCTATAAGGAAGTTGAGAATGAGAATAGGCCTCATGATTATATGGATTCACAACCTGAGATCAACATTTCAATGAGGGCGATTTTGGTGGATTGGCTGGTTGATGTCCACAGCAAGTTTGAACTTTCACCCGAAACATTCTACCTCACGATCAATATAATCGATCGATTCCTTGCGACAAAGGTGGTTCCAAGAAGGGAATTGCAGTTGGTGGGTATTGGGGCAATGCTCATAGCCTCCAAATACGAAGAGATTTGGGCACCAGAGGTAAATGACTTCGTGTGTCTTTCAGATAGAGCTTACACTAATGAACAAATACTAGTGATGGAGAAAAAGATACTTGGCAAGCTGGAATGGACCTTGACTGTGCCTACACTGTATGTATTCCTGGCTCGATTCATCAAGGCGTCGAAGGACTCCGATCACGAGATGGAAAGTCTGGTTTATTTTCTGGCTGAACTTGGCACAATGCATTACAACACCTCAATAATGTACTGCCCATCGATGATTGCCGCCTCGGCAGTCTACGCGGCTCGATGCACGCTGAAGAAAACCCCTGCTTGGGATGACACCCTCAAACTCCACACTGGTTTCTCAGAGCCTCAACTAATTGATTGTGCAAAACTTCTGGTGGGATTCCATGGGGTAGCAAGCAAGAACAAGCTCCAAGTAACATACCGAAAGTACTCGAGCTCCGCGCAGGGAGCGGTAGCTTTGCTTCAGCCAGCCAAAGCTCTGTTGGCTGCTGCCCATTGA 1365 47.77 MASRPVVPQQIRGEAAIGVGKQVKGGAAVDARNRRALGDIGNLVTVRGIDAKANRPITRSFCAQLLANAQAAAKAENNKNQVPVSVDGAAPILDGGLVAVKKPGAPKPAPKKVAAKPKAEVIEISPDTVEQDRGKEAKCANKKKEEEGPSKKKAQTTLTSVLTARSKAACGITKKPKEQIFDIDAADVGNELAAVEYVEDIYKFYKEVENENRPHDYMDSQPEINISMRAILVDWLVDVHSKFELSPETFYLTINIIDRFLATKVVPRRELQLVGIGAMLIASKYEEIWAPEVNDFVCLSDRAYTNEQILVMEKKILGKLEWTLTVPTLYVFLARFIKASKDSDHEMESLVYFLAELGTMHYNTSIMYCPSMIAASAVYAARCTLKKTPAWDDTLKLHTGFSEPQLIDCAKLLVGFHGVASKNKLQVTYRKYSSSAQGAVALLQPAKALLAAAH 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 59500438 59502848 - Tan0019586.2 Tan03g0520 746024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0520 454 MobiDBLite consensus disorder prediction 126 156 - -
Tan03g0520 454 SMART Cyclin_C_2 327 446 IPR004367 -
Tan03g0520 454 SUPERFAMILY Cyclin-like 326 447 IPR036915 -
Tan03g0520 454 FunFam G2/mitotic-specific cyclin-1 315 441 - -
Tan03g0520 454 ProSitePatterns Cyclins signature. 229 260 IPR048258 -
Tan03g0520 454 Gene3D - 200 441 - -
Tan03g0520 454 Gene3D - 214 325 - -
Tan03g0520 454 PIRSF Cyclin_A_B_D_E 1 454 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Tan03g0520 454 PANTHER CYCLINS 175 433 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Tan03g0520 454 Pfam Cyclin, C-terminal domain 327 445 IPR004367 -
Tan03g0520 454 SUPERFAMILY Cyclin-like 189 324 IPR036915 -
Tan03g0520 454 SMART cyclin_7 331 415 IPR013763 -
Tan03g0520 454 SMART cyclin_7 234 318 IPR013763 -
Tan03g0520 454 MobiDBLite consensus disorder prediction 126 152 - -
Tan03g0520 454 Pfam Cyclin, N-terminal domain 200 324 IPR006671 -
Tan03g0520 454 CDD CYCLIN_AtCycB-like_rpt1 177 322 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0520 Tan-Chr3:59500438 Tan05g0055 Tan-Chr5:582263 7.40E-109 dispersed
Tan03g0519 Tan-Chr3:59500438 Tan03g0520 Tan-Chr3:59500438 2.10E-210 tandem
Tan03g0520 Tan-Chr3:59500438 Tan03g0521 Tan-Chr3:59516029 4.30E-242 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0520 K21777 - csv:101217210 697.197