Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0550 ATGGACTTCTTACAGTCTTTGGAACCTCAAATCCTTCTGGGTTTGGCTGTGGCTGTTCTAGCCATTGCAGTTGGTGCTCTCTATTTATTATCCTCCTCCAAAAAAAGCAAATCCAGAGGTTGCTTGAATCCAGAGATTTTCAAGGAGTTTAAACTCATCAAGCGTGTGCAGCTGAGCCATAATGTGGCGAAGTTTACATTTACACTCCCAAGTCCTACTTCAGTTTTGGGTCTTCCCATTGGTCAACATATAAGTTGCAGGGGCAAGGATGGCCAAGGTGAAGAGGTTCTCAAACCTTACACGCCTATTACTTTGGATTCTGATGTTGGATATTTTGAATTGGTCATAAAGATGTATCCCCAAGGAAGGATGTCACACCATTTCCGACAGATGCGTGTTGGTGATTTTCTTTCTGTAAAAGGGCCTAAGGGGCGTTTCAGGTATCAACCAGGCCAGGTCAGAGCATTTGGGATGCTCGCCGGAGGCTCTGGCATTACTCCTATGTATCAAGTTGCTCGAGCCATATTAGAAAATCCAAATGACAAGACGAAGGTACATCTCATTTATGCCAATGTCACCTACGAGGACATTCTTTTAAAGGTAATCTCGCCATTTCTTCTTCAATGA 627 43.54 MDFLQSLEPQILLGLAVAVLAIAVGALYLLSSSKKSKSRGCLNPEIFKEFKLIKRVQLSHNVAKFTFTLPSPTSVLGLPIGQHISCRGKDGQGEEVLKPYTPITLDSDVGYFELVIKMYPQGRMSHHFRQMRVGDFLSVKGPKGRFRYQPGQVRAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTYEDILLKVISPFLLQ 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 60028915 60034402 - Tan0018695.2 Tan03g0550 746054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0550 208 FunFam NADH-cytochrome b5 reductase 40 139 - -
Tan03g0550 208 Gene3D Translation factors 40 139 - -
Tan03g0550 208 CDD cyt_b5_reduct_like 50 200 - -
Tan03g0550 208 PANTHER NADH-CYTOCHROME B5 REDUCTASE 19 200 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Tan03g0550 208 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 45 149 IPR017927 GO:0016491(InterPro)
Tan03g0550 208 PRINTS Cytochrome B5 reductase signature 157 176 - -
Tan03g0550 208 PRINTS Cytochrome B5 reductase signature 134 148 - -
Tan03g0550 208 PRINTS Cytochrome B5 reductase signature 98 105 - -
Tan03g0550 208 PRINTS Cytochrome B5 reductase signature 76 87 - -
Tan03g0550 208 Gene3D - 140 202 IPR039261 -
Tan03g0550 208 Pfam Oxidoreductase NAD-binding domain 158 200 IPR001433 GO:0016491(InterPro)
Tan03g0550 208 Pfam Oxidoreductase FAD-binding domain 50 148 IPR008333 -
Tan03g0550 208 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
Tan03g0550 208 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 137 199 IPR039261 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0550 K00326 - - csv:101212569 366.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0550 Tan-Chr3:60028915 Tan08g1334 Tan-Chr8:51426404 1.70E-89 dispersed
Tan03g0549 Tan-Chr3:60028915 Tan03g0550 Tan-Chr3:60028915 1.90E-110 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan07g0521 . 1 134 NADPH P450 reductases AT5G53560 79.1 2.7e-59 225.3
Tan10g0527 . 1 133 NADPH P450 reductases AT5G53560 67.7 2.7e-51 198.7
Tan06g2314 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.7e-48 189.5
Tan07g0522 . 2 112 NADPH P450 reductases AT5G53560 76.6 2.9e-45 178.7
Tan07g2098 . 4 131 NADPH P450 reductases AT5G53560 64.8 3.8e-45 178.3
Tan10g0527 . 1 132 NADPH P450 reductases AT5G48810 64.2 1.5e-47 186.4
Tan06g2314 . 1 133 NADPH P450 reductases AT5G48810 60.0 2.8e-46 182.2
Tan07g0521 . 1 134 NADPH P450 reductases AT5G48810 60.3 1.8e-45 179.5
Tan07g2098 . 2 132 NADPH P450 reductases AT5G48810 60.9 1.2e-44 176.8
Tan10g0077 . 226 362 NADPH P450 reductases AT5G48810 51.8 2.3e-37 152.5
Tan10g0527 . 22 133 NADPH P450 reductases AT2G32720 83.9 1.4e-50 196.4
Tan06g2314 . 22 133 NADPH P450 reductases AT2G32720 75.0 1.0e-45 180.3
Tan07g2098 . 21 132 NADPH P450 reductases AT2G32720 71.4 6.7e-42 167.5
Tan07g0521 . 22 133 NADPH P450 reductases AT2G32720 67.0 1.7e-40 162.9
Tan07g0522 . 4 111 NADPH P450 reductases AT2G32720 68.5 1.1e-39 160.2
Tan02g2283 . 1 130 NADPH P450 reductases AT1G26340 58.2 5.4e-39 157.9
Tan03g0549 . 2 281 NADPH P450 reductases AT5G17770 81.1 5.0e-132 468.0
Tan08g1334 . 2 280 NADPH P450 reductases AT5G17770 80.3 1.2e-130 463.4
Tan08g1335 . 8 248 NADPH P450 reductases AT5G17770 86.3 5.6e-123 438.0
Tan07g0597 . 10 282 NADPH P450 reductases AT5G17770 73.3 7.1e-118 421.0
Tan08g1336 . 3 197 NADPH P450 reductases AT5G17770 87.7 6.6e-100 361.3
Tan08g1337 . 3 197 NADPH P450 reductases AT5G17770 87.7 6.6e-100 361.3
Tan03g0550 . 2 200 NADPH P450 reductases AT5G17770 80.4 2.0e-88 323.2
Tan07g0521 . 1 134 NADPH P450 reductases AT5G53560 79.1 2.7e-59 225.3
Tan10g0527 . 1 133 NADPH P450 reductases AT5G53560 67.7 2.7e-51 198.7
Tan06g2314 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.7e-48 189.5
Tan07g0522 . 2 112 NADPH P450 reductases AT5G53560 76.6 2.9e-45 178.7
Tan07g2098 . 4 131 NADPH P450 reductases AT5G53560 64.8 3.8e-45 178.3
Tan10g0527 . 1 132 NADPH P450 reductases AT5G48810 64.2 1.5e-47 186.4
Tan06g2314 . 1 133 NADPH P450 reductases AT5G48810 60.0 2.8e-46 182.2
Tan07g0521 . 1 134 NADPH P450 reductases AT5G48810 60.3 1.8e-45 179.5
Tan07g2098 . 2 132 NADPH P450 reductases AT5G48810 60.9 1.2e-44 176.8
Tan10g0077 . 226 362 NADPH P450 reductases AT5G48810 51.8 2.3e-37 152.5
Tan10g0527 . 22 133 NADPH P450 reductases AT2G32720 83.9 1.4e-50 196.4
Tan06g2314 . 22 133 NADPH P450 reductases AT2G32720 75.0 1.0e-45 180.3
Tan07g2098 . 21 132 NADPH P450 reductases AT2G32720 71.4 6.7e-42 167.5
Tan07g0521 . 22 133 NADPH P450 reductases AT2G32720 67.0 1.7e-40 162.9
Tan07g0522 . 4 111 NADPH P450 reductases AT2G32720 68.5 1.1e-39 160.2
Tan02g2283 . 1 130 NADPH P450 reductases AT1G26340 58.2 5.4e-39 157.9
Tan03g0549 . 2 281 NADPH P450 reductases AT5G17770 81.1 5.0e-132 468.0
Tan08g1334 . 2 280 NADPH P450 reductases AT5G17770 80.3 1.2e-130 463.4
Tan08g1335 . 8 248 NADPH P450 reductases AT5G17770 86.3 5.6e-123 438.0
Tan07g0597 . 10 282 NADPH P450 reductases AT5G17770 73.3 7.1e-118 421.0
Tan08g1336 . 3 197 NADPH P450 reductases AT5G17770 87.7 6.6e-100 361.3
Tan08g1337 . 3 197 NADPH P450 reductases AT5G17770 87.7 6.6e-100 361.3
Tan03g0550 . 2 200 NADPH P450 reductases AT5G17770 80.4 2.0e-88 323.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86