Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan03g0578 | ATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGACCAGATCACAGTTCACCAAGACGTGGCACAGAATCTGAAGAAACTGGTTACCGAGCAAGACTGCCCTCATTTGCTCTTCTATGGCCCCTCCGGTTCCGGAAAGAAAACCCTAGTCATGGCCCTTATTAGACAGATGTTTGGAGCTAGTGCGGAGAAGGTGAAGGTGGAGAATAAAACGTGGAAAGTTGATGCTGGAACTAGAAGTATTGATATAGAGTTGACCACCTTATCAAGTACAAACCATGTGGAGCTCACTCCCAGCGATGCGGGTTTTCAAGATAGGTATATTGTTCAAGAGATAATCAAGGAAATGGCAAAAAACAGGCCAATTGACTCCAAAGGGAAAAGGGGACATAAAGTTTTGGTTCTAAACGATGTTGACAAATTATCAAGAGAAGCCCAGCACTCTCTTAGGAGAACAATGGAGAAATATAGCTCGTACTGTAGGTTAATACTTTGCTGCAATAGCTCATCAAGAGTTACTGAAGCAATCCGTTCTCGTTGCCTAAATGTGCGGATAAATGCACCATCAGAGGAGCAGATTGTCAAGGTACTAGAGTTCATTGGGAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGTATTGCAGAAAAATCAAACCGGAGTTTGAGGAGAGCTATACTATCATTCGAGACTTGTCGTGTTCAACAGTATCCTTTTGTTTCTAACCAGGCAATATCACCAATGGATTGGGAGGAGTACATCTGTGAGATAGCGTCTGACATAATGAAGGAACAGAGTCCCAAGAGACTGTTCCAGGTTCGTGGGAAGTTATATGAGCTCCTGGTTAATTGTATTCCACCCGAGATCATATTGAAGAGGTTGCTTTATGAGCTACTTAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCATTGGGCTGCATACTATGAACATAGGATGCGCCTTGGACAGAAAGCCATCTTCCATATTGAAGCATTTGTGGCGAAGTTCATGAGCATATACAAGACTTTTCTCATTTCGACGTTTGGCTAA | 1065 | 42.91 | MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGASAEKVKVENKTWKVDAGTRSIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINAPSEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQAISPMDWEEYICEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG | 354 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 60519465 | 60527753 | + | Tan0001382.1 | Tan03g0578 | 746082 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan03g0578 | 354 | FunFam | replication factor C subunit 3 | 190 | 248 | - | - | |
| Tan03g0578 | 354 | Pfam | DNA polymerase III, delta subunit | 18 | 188 | - | - | |
| Tan03g0578 | 354 | CDD | HLD_clamp_RFC | 189 | 257 | IPR047854 | - | |
| Tan03g0578 | 354 | SMART | AAA_5 | 33 | 192 | IPR003593 | GO:0016887(InterPro) | |
| Tan03g0578 | 354 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 3 | 346 | IPR050238 | GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER) | |
| Tan03g0578 | 354 | Gene3D | - | 1 | 189 | IPR027417 | - | |
| Tan03g0578 | 354 | Pfam | Replication factor C subunit 3, C-terminal domain | 253 | 342 | - | - | |
| Tan03g0578 | 354 | Gene3D | - | 252 | 345 | - | - | |
| Tan03g0578 | 354 | CDD | AAA | 19 | 190 | - | - | |
| Tan03g0578 | 354 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 251 | 346 | IPR008921 | GO:0003677(InterPro)|GO:0006260(InterPro) | |
| Tan03g0578 | 354 | Pfam | RCF1/5-like, AAA+ ATPase lid domain | 196 | 236 | - | - | |
| Tan03g0578 | 354 | FunFam | Replication factor C subunit 3 | 252 | 345 | - | - | |
| Tan03g0578 | 354 | FunFam | Replication factor C subunit 5 | 1 | 189 | - | - | |
| Tan03g0578 | 354 | Gene3D | - | 190 | 249 | - | - | |
| Tan03g0578 | 354 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 3 | 239 | IPR027417 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan03g0578 | Tan-Chr3:60519465 | Tan03g0580 | Tan-Chr3:60519465 | 5.30E-155 | dispersed | |
| Tan03g0578 | Tan-Chr3:60519465 | Tan03g0579 | Tan-Chr3:60519465 | 1.70E-201 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan03g0578 | K10756 | - | csv:101221072 | 661.759 |