Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0578 ATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGACCAGATCACAGTTCACCAAGACGTGGCACAGAATCTGAAGAAACTGGTTACCGAGCAAGACTGCCCTCATTTGCTCTTCTATGGCCCCTCCGGTTCCGGAAAGAAAACCCTAGTCATGGCCCTTATTAGACAGATGTTTGGAGCTAGTGCGGAGAAGGTGAAGGTGGAGAATAAAACGTGGAAAGTTGATGCTGGAACTAGAAGTATTGATATAGAGTTGACCACCTTATCAAGTACAAACCATGTGGAGCTCACTCCCAGCGATGCGGGTTTTCAAGATAGGTATATTGTTCAAGAGATAATCAAGGAAATGGCAAAAAACAGGCCAATTGACTCCAAAGGGAAAAGGGGACATAAAGTTTTGGTTCTAAACGATGTTGACAAATTATCAAGAGAAGCCCAGCACTCTCTTAGGAGAACAATGGAGAAATATAGCTCGTACTGTAGGTTAATACTTTGCTGCAATAGCTCATCAAGAGTTACTGAAGCAATCCGTTCTCGTTGCCTAAATGTGCGGATAAATGCACCATCAGAGGAGCAGATTGTCAAGGTACTAGAGTTCATTGGGAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGTATTGCAGAAAAATCAAACCGGAGTTTGAGGAGAGCTATACTATCATTCGAGACTTGTCGTGTTCAACAGTATCCTTTTGTTTCTAACCAGGCAATATCACCAATGGATTGGGAGGAGTACATCTGTGAGATAGCGTCTGACATAATGAAGGAACAGAGTCCCAAGAGACTGTTCCAGGTTCGTGGGAAGTTATATGAGCTCCTGGTTAATTGTATTCCACCCGAGATCATATTGAAGAGGTTGCTTTATGAGCTACTTAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCATTGGGCTGCATACTATGAACATAGGATGCGCCTTGGACAGAAAGCCATCTTCCATATTGAAGCATTTGTGGCGAAGTTCATGAGCATATACAAGACTTTTCTCATTTCGACGTTTGGCTAA 1065 42.91 MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGASAEKVKVENKTWKVDAGTRSIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINAPSEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQAISPMDWEEYICEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 354
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 60519465 60527753 + Tan0001382.1 Tan03g0578 746082
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0578 354 FunFam replication factor C subunit 3 190 248 - -
Tan03g0578 354 Pfam DNA polymerase III, delta subunit 18 188 - -
Tan03g0578 354 CDD HLD_clamp_RFC 189 257 IPR047854 -
Tan03g0578 354 SMART AAA_5 33 192 IPR003593 GO:0016887(InterPro)
Tan03g0578 354 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 3 346 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Tan03g0578 354 Gene3D - 1 189 IPR027417 -
Tan03g0578 354 Pfam Replication factor C subunit 3, C-terminal domain 253 342 - -
Tan03g0578 354 Gene3D - 252 345 - -
Tan03g0578 354 CDD AAA 19 190 - -
Tan03g0578 354 SUPERFAMILY post-AAA+ oligomerization domain-like 251 346 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Tan03g0578 354 Pfam RCF1/5-like, AAA+ ATPase lid domain 196 236 - -
Tan03g0578 354 FunFam Replication factor C subunit 3 252 345 - -
Tan03g0578 354 FunFam Replication factor C subunit 5 1 189 - -
Tan03g0578 354 Gene3D - 190 249 - -
Tan03g0578 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 239 IPR027417 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0578 Tan-Chr3:60519465 Tan03g0580 Tan-Chr3:60519465 5.30E-155 dispersed
Tan03g0578 Tan-Chr3:60519465 Tan03g0579 Tan-Chr3:60519465 1.70E-201 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0578 K10756 - csv:101221072 661.759