Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0580 ATGCCCTTCCTTTTTCGTTTTTCTTTTCAGGCTGGAACTAGAAGTATTGATATAGAGTTGACCACCTTATCAAGTACAAACCATGTGGAGCTCACTCCCAGCGATGCGGGTTTTCAAGATAGGTATATTGTTCAAGAGATAATCAAGGAAATGGCAAAAAACAGGCCAATTGACTCCAAAGGGAAAAGGGGACATAAAGTTTTGGTTCTAAACGATGTTGACAAATTATCAAGAGAAGCCCAGCACTCTCTTAGGAGAACAATGGAGAAATATAGCTCGTACTGTAGGTTAATACTTTGCTGCAATAGCTCATCAAGAGTTACTGAAGCAATCCGTTCTCGTTGCCTAAATGTGCGGATAAATGCACCATCAGAGGAGCAGATTGTCAAGGTACTAGAGTTCATTGGGAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGTATTGCAGAAAAATCAAACCGGAGTTTGAGGAGAGCTATACTATCATTCGAGACTTGTCGTGTTCAACAGTATCCTTTTGTTTCTAACCAGGCAATATCACCAATGGATTGGGAGGAGTACATCTGTGAGATAGCGTCTGACATAATGAAGGAACAGAGTCCCAAGAGACTGTTCCAGGTTCGTGGGAAGTTATATGAGCTCCTGGTTAATTGTATTCCACCCGAGATCATATTGAAGAGGTTGCTTTATGAGCTACTTAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCATTGGGCTGCATACTATGAACATAGGATGCGCCTTGGACAGAAAGCCATCTTCCATATTGAAGCATTTGTGGCGAAGTTCATGAGCATATACAAGACTTTTCTCATTTCGACGTTTGGCTAA 867 41.41 MPFLFRFSFQAGTRSIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINAPSEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQAISPMDWEEYICEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 60519465 60527753 + Tan0001382.3 Tan03g0580 746084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0580 288 Gene3D - 8 123 IPR027417 -
Tan03g0580 288 SUPERFAMILY post-AAA+ oligomerization domain-like 185 280 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Tan03g0580 288 Gene3D - 124 183 - -
Tan03g0580 288 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 19 280 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Tan03g0580 288 Pfam Replication factor C subunit 3, C-terminal domain 187 276 - -
Tan03g0580 288 FunFam replication factor C subunit 3 124 182 - -
Tan03g0580 288 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 171 IPR027417 -
Tan03g0580 288 Gene3D - 186 279 - -
Tan03g0580 288 Pfam DNA polymerase III, delta subunit 42 122 - -
Tan03g0580 288 Pfam RCF1/5-like, AAA+ ATPase lid domain 130 170 - -
Tan03g0580 288 CDD HLD_clamp_RFC 123 191 IPR047854 -
Tan03g0580 288 FunFam Replication factor C subunit 3 186 279 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0578 Tan-Chr3:60519465 Tan03g0580 Tan-Chr3:60519465 5.30E-155 dispersed
Tan03g0580 Tan-Chr3:60519465 Tan11g1257 Tan-Chr11:10727153 7.20E-09 dispersed
Tan03g0579 Tan-Chr3:60519465 Tan03g0580 Tan-Chr3:60519465 5.30E-155 tandem
Tan03g0580 Tan-Chr3:60519465 Tan03g0581 Tan-Chr3:60519465 3.10E-161 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0580 K10756 - csv:101221072 512.686