Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0650 ATGGCAGAAGAAGTAGATCAACAAGTTGATCAACTTGATCCTCCTCCCTTCTTTCTATGTCCCATCTCTTTGCAAATCATGAAAGATCCCGTCATGATCGCCTCCGGCATAACCTACGATCGGGAGAACATTGAGAGATGGTTGTTTTCTAATAAACATACAACATGTCCGGTCACTCAGGTGGTCTTGTTAAACTTTGATCTCACTCCCAACCATACTCTCCGACGATTGATTCAAGCTTGGTGCACCGTCAACGCTCGCAACGGCGTCGAGAGAATTCCAACGCCGAAGCCTCCCATTGACCATAAGCAAGTTGTTAAGATTCTTGCTGATGCAAAGTTGTCTTCGTTCTCTCAGCAGAATTGTCTCCGACGACTTCGATCTATTGCATTGGCAAATGAGACGAATAAACGTTGCATGGAATCTGCTGGAGTTGTGGAGTTCTTGGTTGGAGTTGTGTGTAATTCCATCAATGTGGAGCCGAACTTTGAAGATTACGCGTTTGACGACCAGTTATCAAATTTGGGCGATGAAGCTTTGAGCATTCTTTACAAACTTCAAATCTCCGAATCCGGCCTCAAATTTCTTCTCGCCAACAATGGCGGCGTCTTCATCACAACCCTAACCAAAATCTTGCAGAACGGCACCTATGGCTCCCGAGCGTATGCAATAATGCTTCTGCAGTCAATGTTCGAAGTCGCCGATCAGATCCAGGTCCTCAGCCTAAATGTGGAATTCTTCATCGAAATCGTCCAAATTCTGAAGGATCAGATCTCGAAACAGGCATCGAAATCGGCATTGAAATTACTAATCGGACTCTGTTCGAGTTTCAGAAACAGAGTAAAAGCGGTTCAAGCCGGTGCGGTTCCGGTTCTGATCGATCTCCTCCTCGATCTCGATTCCTCGGAGAAGCGTTTGTGCGAGATGATTCTCGTGGCGCTCGATCTCCTCTGCGGCTGCGCCGACGGCAGGGCGGAGCTGTTGAACCACGCGGCGGGGCTCGCCGTCGTGTCGAAGAAGATTCTAAGAGTTTCGTCGCTCGGAAGCGAGAAGGCTGTCGGAATCTTGTGCTCCGTCGCGAGATTCTCGGCGAGCCAAACCGTCGTTCAGGAAATGGTGCGGGTGGGAGTTGTGACGAAGCTCTGTTTTCTGCTTCAAGTCGTCAGCGCCGGAGCCAAAGCGAAAGAGAAGGCCAAAGAGATTCTGAAGCTCCATGGTCGGACATGGCGGAATTCTTCATGTTTGCCTTCGAGTTTGCGATCTTCTTATCCATTTTAG 1278 48.75 MAEEVDQQVDQLDPPPFFLCPISLQIMKDPVMIASGITYDRENIERWLFSNKHTTCPVTQVVLLNFDLTPNHTLRRLIQAWCTVNARNGVERIPTPKPPIDHKQVVKILADAKLSSFSQQNCLRRLRSIALANETNKRCMESAGVVEFLVGVVCNSINVEPNFEDYAFDDQLSNLGDEALSILYKLQISESGLKFLLANNGGVFITTLTKILQNGTYGSRAYAIMLLQSMFEVADQIQVLSLNVEFFIEIVQILKDQISKQASKSALKLLIGLCSSFRNRVKAVQAGAVPVLIDLLLDLDSSEKRLCEMILVALDLLCGCADGRAELLNHAAGLAVVSKKILRVSSLGSEKAVGILCSVARFSASQTVVQEMVRVGVVTKLCFLLQVVSAGAKAKEKAKEILKLHGRTWRNSSCLPSSLRSSYPF 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 62003067 62004858 - Tan0000541.1 Tan03g0650 746154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0650 425 ProSiteProfiles U-box domain profile. 13 88 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan03g0650 425 PANTHER WDSAM1 PROTEIN 12 418 IPR045185 GO:0061630(InterPro)
Tan03g0650 425 CDD RING-Ubox_PUB 15 68 IPR045210 -
Tan03g0650 425 Gene3D - 103 411 IPR011989 -
Tan03g0650 425 SUPERFAMILY ARM repeat 106 390 IPR016024 -
Tan03g0650 425 SUPERFAMILY RING/U-box 10 87 - -
Tan03g0650 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 92 IPR013083 -
Tan03g0650 425 SMART Ubox_2 17 81 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan03g0650 425 Pfam U-box domain 15 84 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0650 Tan-Chr3:62003067 Tan05g0080 Tan-Chr5:739891 1.40E-96 dispersed
Tan03g0650 Tan-Chr3:62003067 Tan08g1621 Tan-Chr8:65799506 5.30E-117 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0650 - - - 0.0