Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0676 ATGGAAGCGTCTGGTAGCGACTCCGACTCTCATAGAGCTGCTTCCACCAGTGGCAGTTCAAGAAGGTTTGGAATGTTAGCTGCCTCTAATATAATTCAGGCTCCGCTTTCCGCACTGTTGGAGTATTCGGGTCTTCTTCGTGGCCGCCCAAGTCATCAAGAATCCGAGGGATTGATAAGTGCACGACTGCCTTCGGGGTTTCGAGACCATCTTCGTAGTCAGATTGAAGAATCTTCTGGTGCCACCAACGATGGAGAGGTTTCGATTAGGATAATTGGGGCAGGGGAACCTGAACATGGTAGGGATGGTGCTGGACTAGTAGTTGGGCAAGCGAGAGAAGTCAGTGGTCAGAATGCCGTGTCTTTGCAATCTGTTTCGGGGTTGGCATCGTCGGAGCTTAGCCAGGGAGATCCTACTGCTGAACGTGGTGCGAGAGAGGGCATTCCTCAACCAATTGACGCAGGTGCTGATGGAGATGCCTCGGAGGCAGCTGGGGGAAATAGCAGGGATTCTTCTTACCAAAGGTATGATATTCAACAGGCTGCTCGCGGGATTGAGCAGATTCTCCCCTTTAGTTTTCTTCTCCTGGTGGTCTTCATTCGACAGCATTTGCAAGGCTTCTTCGTGACAATTTGGATTGCTGCTTTCATGTATAAGTCAAATGATATTTTGCGAAAACAAACAGCTTTGAAGGGAGAGAGAAAAATCTCTGTTTTGGTTGCCATTTCTCTTGCATTCACTGTTCATGTTATTGGTGTGTACTGGTGGTATCAGAATGATGACCTTTTATATCCGTTGATCATGCTTCCTCCCAGAGCAATACCTCCTTTTTGGCACGCTATTTTCATCATCATGGTGAATGACACTTTGGTCCGTCAGGCAGTGATGGTGATCAAGTGTGTTCTATTGATGTATTACAAGAACAGCAGAGGCCGCAATTATCGTAAACAGGGTCAAATGCTAACTTTAGTCGAGTATCTGCTACTACTGTACCGTGCCTTGTTGCCTACTCCTGTCTGGTATCGTTTCTTTTTGAACAAAGAGTACGGGAGTCTATTTTCATCACTTTTGACAGGACTGTACCTAACTTTCAAACTCACATCTGTTGTTGAAAAGGTACAATCCTTCTTTGCTGCTCTGAAAGCACTGTCACGTAAAGAGGTGCATTATGGGGCATATGCAACGTCAGAGCAGGTCAGTGCAGCTGGTGATTTGTGTGCTATTTGCCAAGAGAAGATGCATGCTCCTATCCTGCTCCGATGTAAACACATATTTTGTGAAGATTGTGTATCAGAGTGGTTCGAACGGGAACGGACATGTCCATTGTGTAGAGCTTTGGTTAAACCTGCCGATCTCAGGTCATTCGGCGATGGATCAACAAGTCTGTTTTTCCAGGTTTTCTAA 1404 46.23 MEASGSDSDSHRAASTSGSSRRFGMLAASNIIQAPLSALLEYSGLLRGRPSHQESEGLISARLPSGFRDHLRSQIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAREVSGQNAVSLQSVSGLASSELSQGDPTAERGAREGIPQPIDAGADGDASEAAGGNSRDSSYQRYDIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKISVLVAISLAFTVHVIGVYWWYQNDDLLYPLIMLPPRAIPPFWHAIFIIMVNDTLVRQAVMVIKCVLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRKEVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQVF 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 62269030 62276909 - Tan0020032.1 Tan03g0676 746180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0676 467 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 12 467 IPR044235 GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:1904294(InterPro)
Tan03g0676 467 MobiDBLite consensus disorder prediction 127 171 - -
Tan03g0676 467 SMART ring_2 406 443 IPR001841 -
Tan03g0676 467 MobiDBLite consensus disorder prediction 1 20 - -
Tan03g0676 467 ProSitePatterns Zinc finger RING-type signature. 421 430 IPR017907 -
Tan03g0676 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 381 454 IPR013083 -
Tan03g0676 467 SUPERFAMILY RING/U-box 401 449 - -
Tan03g0676 467 CDD RING-HC_RNFT1-like 404 444 - -
Tan03g0676 467 ProSiteProfiles Zinc finger RING-type profile. 406 444 IPR001841 -
Tan03g0676 467 Pfam Ring finger domain 405 444 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0676 Tan-Chr3:62269030 Tan04g1456 Tan-Chr4:17499213 1.70E-156 dispersed
Tan07g1616 Tan-Chr7:67566744 Tan03g0676 Tan-Chr3:62269030 1.70E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0676 - - - 0.0