Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0677 ATGATTCTGGTTGGCCATCAGCAACAACTATTTACAATATACAGGGATACTCGTGTTACAGTTTTAGAACAGAGTCTTAGGAAATTAGGTGTTGAGCGGCTTAGCAAGGACGATGTCCAGAAAATGCAGAGGGAGGCTCTTGAAGCTAAGATTGGGAACTGGATACATTACATGCCCATCGCTGTTGAAACACTTTTTGGAACTAAAGCATGCATTGAAATGCGGGATTCTGCATTGAGCTTAACACAACGCCTTGCTGAGACAGCTCAAGAGACCTTTGTTGATTTTGAAGAAGTCGTGGAAAAAGATGCCACAAAAACTGTTGTTCTTGATGGGTCTGTTCATCCCTTGACTAGTTATGTGATAAACTACGTCAAGTTCTTATTTGAGTAA 393 40.97 MILVGHQQQLFTIYRDTRVTVLEQSLRKLGVERLSKDDVQKMQREALEAKIGNWIHYMPIAVETLFGTKACIEMRDSALSLTQRLAETAQETFVDFEEVVEKDATKTVVLDGSVHPLTSYVINYVKFLFE 130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 62297719 62299465 - Tan0006021.1 Tan03g0677 746181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0677 130 SUPERFAMILY Cullin repeat-like 1 130 IPR016159 -
Tan03g0677 130 Gene3D Exocyst complex component Exo70 1 65 - -
Tan03g0677 130 Gene3D Exocyst complex component Exo70 66 130 - -
Tan03g0677 130 PANTHER EXOCYST COMPLEX PROTEIN EXO70 62 130 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Tan03g0677 130 Pfam Exo70 exocyst complex subunit C-terminal 61 130 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0677 Tan-Chr3:62297719 Tan03g1260 Tan-Chr3:68895106 1.10E-52 dispersed
Tan03g0677 Tan-Chr3:62297719 Tan05g2961 Tan-Chr5:81690153 2.20E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0677 K07195 - csv:105436018 127.487