Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan03g0711 | ATGACTTCTGGTCAGCCCCTGCTGACTTCATCAGAATCTGCATCAGTTATTGAAGACAGATCCTCATCTCGAAATTTTGGTTCCGCTAGTTGTCTATGTCGCAGTGCTTCCTTCACCTCTTCCAGTTACGACGATGCTCAGAGTGACATTGTGGATGTGAAGGAAAACTGCACCAGTCCTGTTGGAGATACCGGTTGGAGCAGTGAGAACTCCCTCAGACGTTCCACTTCTCTTTCTAGGAAGAAGCAATATCATACTATTGGCTCTCTGTTTCCTCGGCAGTTACCTTCTGGCTACCCCACCCAGGATAGAAGACGCCTGGTCTCGTGGGGTGCAATGGAGTTGCATAATATTAATGATAATCCTGCGAGCTTTGAACTTTCTAGGGTCCAGGAGAAGTTGCATAAGGCACAAAGAAGTCGTCATAAGAGTATGCAGTTTGAAGATAATTTACAGCATGACGATAATCCAAGGTTGATCTATATCAATGATCCAAGGAGAACTAATGACAAGTATGAGTTCACAGGAAATGAGATAACCACTAGCAAGTACACATTGATTACCTTCTTACCAAAGAACCTCTTTATTCAGTTCCACCGCGTTGCCTATCTTTATTTTCTGGCTATTGCAGCTCTTAACCAGCTTCCACCTTTGGCAGTCTTTGGGAGAACAGTATCTCTTTTTCCCCTCCTGTTTGTGCTCTGTGTTACAGCCATTAAAGATGGCTACGAGGATTGGCGAAGACACAGATCAGATCGCAATGAGAACAATAGAGAGGCTTTGGTGCTTCAATCTGATGAATTCCGATTGAAAGTGTGGAAAAAAATACGAGCAGGTGAAGTTGTAAAGATTTGTGCAGATGAGGTCATTCCTTGTGACATGGTTTTACTGGGAACAAGTGATCCTAGTGGCCTTGCTTACATCCAAACAATGAATTTGGATGGTGAATCAAACTTGAAGACAAGGTATGCTAGGCAGGAAACAGCATCAGCAGTAGCTGAGGGGTGTTCGTATTCTGGTCTTATTCGATGTGAACAACCTAATAGGAATATTTATGAGTTCACTGCCAATATGGAGTTCAATGCCCATAAATTTCCCCTCAGCCAGTCAAACATAGTCTTGCGTGGTTGTCAACTGAAGAACACGGAATGGATTATTGGGGTGGTTGTCTATGCTGGACAAGAGACAAAAGCCATGTTAAACAGTGCAGTGTCTCCCGCCAAGCGAAGTAAACTGGAGGGTTACATGAACAGGGAAACATTGTGGTTGTCGATCTTCCTCTTTATCATGTGTCTAGTTGTGGCCCTTGGAATGGGTTTATGGCTTGTTCGTCACAAGGAACGGCTTGATACCTTGCCATATTACAGGAAAAGGTATTTCACAAACGGGGCAGAGGATGGTAAGAGGTACAGGTTTTATGGAATACCTATGGAGACCTTTTTCTCCTTTTTGAGTTCTATTATAGTGTTTCAGATTATGATACCGATATCCCTTTATATTACAATGGAGATGGTGAGACTTGGCCAGTCATATTTCATGATTGAAGACAAGCACATGTACTGCAGAATCTCTTGCTCAAGGTTCCAGTGTAGATCATTGAATATCAATGAGGATCTTGGCCAAGTTCGCTATGTATTTTCTGATAAAACGGGAACACTTACTGAAAATAAAATGGAATTCAAAAGAGCAAGTGTGCATGGGAAGAATTACGGGAACAACTTGTCTGAGGGATATCCATCAATGTTGTATTCCATTCCAGCAACTTTAGGGAGGAGGAGGTGGAAACTTAAATCTGACATTGCTGTTGATACCGAACTTGTCAAATTATTGCACAAGGACCTAAAAGGAGATGAAAAGATTGCTGCGCATGAATTTTTTCTTACATTGGCTGCGTGCAATACTGTTATTCCAATTCTCATGGATGACAAATCGAGCTATGCGAATGGTGAATTGCACGAGGATTTTGAAACTATTGATTATCAGGGGGAATCCCCTGACGAGCAAGCACTAGTTGCTGCAGCCTCTGCTTATGGATATACCCTTTTTGAGCGCACATCTGGGCATATTGTTATAGATGTCAATGGTGAGAACTTAAGGTTAGATGTTTTGGGTTTACATGAGTTCGATAGTGTTCGCAAAAGAATGTCTGTGGTCATCAGATTCCCTAACAACACTATAAAGGTGTTGGTGAAAGGTGCTGATACTTCAATGTTGAGTGTTTTACATAATGACTCGGATAGGGAAGAATTTATCAAGGATACTACTCAGAGCCATTTGTGTGAATATTCAATGGAGGGTTTGCGAACACTTGTAGTTGCTGCCAGAGATCTGACAGATTCTGACTTTGAACTGTGGCAGAGCAGATATGAGGATGCTAGTACTTCACTGACTGAAAGAGCAATAAAACTACGTCATACAGCATCCCTTATAGAATGCGACTTAAAGCTTTTGGGTGCAACTGCTATTGAGGACAAGCTTCAAGATGGTGTGCCTGAAGCCATCGAATCTCTTCGGCAGGCAGGAATAAAGGTTTGGATTCTGACTGGAGATAAGCAGGAGACGGCCATATCAATTGGTCTCTCCTGCAAGCTGCTGACTCCAGACATGCAGTCAATTATTATCAATGGAAATTCCGAAAATGATTGCAGGCAACTTTTAGGTGATGCTATAGCAAAATTTGGTATTAAATCAACACAGGGTGAAAGTCAAAGACAGAAGCTGAAGAATCATGAGAATGACCGTCCTGATATACTGAAGACATCTAGTATGCCAGATTTTAATGAAGTGAAAGAAGAAGAAGGGACTACTGATAAACCACTAGCTCTAATAATCGATGGAAACAGTTTGGTGTACATTTTGGAGAAGGAATTGGAGTCAGAGCTTTTTGACCTTGCAACTTCATGCAATGTTGTGCTATGCTGTCGTGTTGCACCTCTACAGAAAGCTGGAATTGTTGATTTGATCAAGAGTAGAACTGATGATATGACATTGGCAATTGGAGATGGGGCCAATGATGTCTCAATGATTCAGATGGCTGATGTAGGCGTTGGTATATGTGGACAGGAAGGGCGTCAAGCAGTAATGGCATCTGATTTTGCCATGGGACAATTTCGATTTTTGAAAAGATTACTTCTAGTGCATGGACATTGGAACTATCAACGTGTAGGCTACATGGTTCTTTACAACTTCTACCGCAATGCTGTTTTCGTCTTGATGCTCTTCTGGTACATTCTATGCACAGCGTTCTCAACAACTTCAGCTTTGACTGATTGGAGTAGTGTGTTTTACTCTGTTATTTATACGTCTATCCCTACTATTTTTGTTGGTATTCTGGACAAAGACTTGAGTGACAAAACTCTACTACAATATCCTAAGCTATATGGTGCTGGCCATAGACAGGAAGCATACAATTTGCGTCTCTTTTGGTTCACAATGATTGATACCCTGTGGCAGAGTCTTGTTCTCTTCTATGTGCCATTATACATTTACAAGGAGAGTTCCATTGATATATGGAGCTTGGGAAGTTTGTGGACCATAGCAGTTGTTATCCTTGTGAATGTACACTTGGCGATGGATGTTCAACGTTGGGTGTATATTACCCATGCTGCAGTTTGGGGATCCATAGTCATAACATATGCCTGCATGGTGGTGTTAGATTCAATACCCGTTTTTCCTAATTACTGGACGATCTTTTATCTGGCTAAGTCCCCGACCTATTGGTTGACTATATTGCTTATAATAGTTGTAGCATTGCTTCCGCGTTATCTTTTTAAAGTTGTGAACCAAAGATTTTGGCCCTCAGATATTCAGATAGCCAAAGAAGCCGAGGTACTGAGAAATCGAAAAGGTCGTGAACAATTGGGTTCAAAGCGAGATCGAGATTCCAATTAA | 3891 | 41.63 | MTSGQPLLTSSESASVIEDRSSSRNFGSASCLCRSASFTSSSYDDAQSDIVDVKENCTSPVGDTGWSSENSLRRSTSLSRKKQYHTIGSLFPRQLPSGYPTQDRRRLVSWGAMELHNINDNPASFELSRVQEKLHKAQRSRHKSMQFEDNLQHDDNPRLIYINDPRRTNDKYEFTGNEITTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNREALVLQSDEFRLKVWKKIRAGEVVKICADEVIPCDMVLLGTSDPSGLAYIQTMNLDGESNLKTRYARQETASAVAEGCSYSGLIRCEQPNRNIYEFTANMEFNAHKFPLSQSNIVLRGCQLKNTEWIIGVVVYAGQETKAMLNSAVSPAKRSKLEGYMNRETLWLSIFLFIMCLVVALGMGLWLVRHKERLDTLPYYRKRYFTNGAEDGKRYRFYGIPMETFFSFLSSIIVFQIMIPISLYITMEMVRLGQSYFMIEDKHMYCRISCSRFQCRSLNINEDLGQVRYVFSDKTGTLTENKMEFKRASVHGKNYGNNLSEGYPSMLYSIPATLGRRRWKLKSDIAVDTELVKLLHKDLKGDEKIAAHEFFLTLAACNTVIPILMDDKSSYANGELHEDFETIDYQGESPDEQALVAAASAYGYTLFERTSGHIVIDVNGENLRLDVLGLHEFDSVRKRMSVVIRFPNNTIKVLVKGADTSMLSVLHNDSDREEFIKDTTQSHLCEYSMEGLRTLVVAARDLTDSDFELWQSRYEDASTSLTERAIKLRHTASLIECDLKLLGATAIEDKLQDGVPEAIESLRQAGIKVWILTGDKQETAISIGLSCKLLTPDMQSIIINGNSENDCRQLLGDAIAKFGIKSTQGESQRQKLKNHENDRPDILKTSSMPDFNEVKEEEGTTDKPLALIIDGNSLVYILEKELESELFDLATSCNVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFRFLKRLLLVHGHWNYQRVGYMVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSIPTIFVGILDKDLSDKTLLQYPKLYGAGHRQEAYNLRLFWFTMIDTLWQSLVLFYVPLYIYKESSIDIWSLGSLWTIAVVILVNVHLAMDVQRWVYITHAAVWGSIVITYACMVVLDSIPVFPNYWTIFYLAKSPTYWLTILLIIVVALLPRYLFKVVNQRFWPSDIQIAKEAEVLRNRKGREQLGSKRDRDSN | 1296 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 62589086 | 62596818 | + | Tan0022165.5 | Tan03g0711 | 746215 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan03g0711 | 1296 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 174 | 1266 | IPR023298 | - | |
| Tan03g0711 | 1296 | SFLD | p-type atpase | 530 | 1050 | IPR044492 | - | |
| Tan03g0711 | 1296 | Pfam | Cation transport ATPase (P-type) | 663 | 739 | - | - | |
| Tan03g0711 | 1296 | CDD | P-type_ATPase_APLT_Dnf-like | 176 | 1159 | - | - | |
| Tan03g0711 | 1296 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 149 | 1275 | - | GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER) | |
| Tan03g0711 | 1296 | NCBIfam | HAD-IC family P-type ATPase | 969 | 1085 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Tan03g0711 | 1296 | NCBIfam | HAD-IC family P-type ATPase | 479 | 570 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Tan03g0711 | 1296 | Gene3D | - | 814 | 1039 | IPR023214 | - | |
| Tan03g0711 | 1296 | SUPERFAMILY | HAD-like | 541 | 1045 | IPR036412 | - | |
| Tan03g0711 | 1296 | MobiDBLite | consensus disorder prediction | 59 | 79 | - | - | |
| Tan03g0711 | 1296 | SFLD | C1.7: P-type atpase like | 530 | 1050 | - | - | |
| Tan03g0711 | 1296 | Pfam | E1-E2 ATPase | 258 | 503 | - | - | |
| Tan03g0711 | 1296 | FunFam | Phospholipid-transporting ATPase | 813 | 1039 | - | - | |
| Tan03g0711 | 1296 | NCBIfam | phospholipid-translocating P-type ATPase | 174 | 1274 | IPR006539 | GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro) | |
| Tan03g0711 | 1296 | Gene3D | - | 556 | 570 | IPR023299 | GO:0000166(InterPro) | |
| Tan03g0711 | 1296 | Gene3D | - | 660 | 797 | IPR023299 | GO:0000166(InterPro) | |
| Tan03g0711 | 1296 | MobiDBLite | consensus disorder prediction | 60 | 74 | - | - | |
| Tan03g0711 | 1296 | MobiDBLite | consensus disorder prediction | 900 | 921 | - | - | |
| Tan03g0711 | 1296 | Gene3D | - | 236 | 402 | - | - | |
| Tan03g0711 | 1296 | Gene3D | - | 543 | 555 | IPR023214 | - | |
| Tan03g0711 | 1296 | MobiDBLite | consensus disorder prediction | 903 | 918 | - | - | |
| Tan03g0711 | 1296 | Pfam | Phospholipid-translocating ATPase N-terminal | 160 | 225 | IPR032631 | - | |
| Tan03g0711 | 1296 | SUPERFAMILY | Calcium ATPase, transduction domain A | 257 | 398 | IPR008250 | - | |
| Tan03g0711 | 1296 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 552 | 830 | IPR023299 | GO:0000166(InterPro) | |
| Tan03g0711 | 1296 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 548 | 554 | IPR018303 | - | |
| Tan03g0711 | 1296 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 1027 | 1267 | IPR032630 | - | |
| Tan03g0711 | 1296 | Gene3D | - | 526 | 542 | - | - | |
| Tan03g0711 | 1296 | FunFam | Phospholipid-transporting ATPase | 660 | 804 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan03g0709 | Tan-Chr3:62589086 | Tan03g0711 | Tan-Chr3:62589086 | 0.00E+00 | dispersed | |
| Tan03g0711 | Tan-Chr3:62589086 | Tan11g1028 | Tan-Chr11:8153804 | 0.00E+00 | dispersed | |
| Tan03g0710 | Tan-Chr3:62589086 | Tan03g0711 | Tan-Chr3:62589086 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan03g0711 | K14802 | - | csv:101206692 | 2365.5 |