Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0722 ATGGCGGTTTCTCCCCATTCTTTTCCACCGAGGAAGCGGCGGCCGTCGGCGGCGGCATTCGTCTCCCCCAAATTCTCCGGCCAAATTCTCGTCCAATCGCTTCTCTGTCTCTGCCAAGAAATCTCCGCCATGAAACCGCTTCAGTTCCTTCTCAAGCGCTATTCCATCTCCATGATTCGCAAATCGCGATTGCTCGAGGTTTTTCTCGAGGATCTCCGCCGCAATCGGATCGTTTCGCTTTCCGCCTCCGCCTCGCTCTGCCTTGAAGAAATGTACATCGTTTTGCAGAGAATCAAGACCTTGATTGAAGACTGTTCTAACGGAAGCAAGATGTGGTTACTCACTCAGAACGAATCGATTGCTAACAATTTTCACGAACTCACCTTGGATTTATCGACTCTGCTCGATATCTTCCCCGTGAAGGACGCTGGATTAACCGAAGACGTTGAGGAATTGTTCTACCTCTTGAGAAATCAGTGCTCCGAATCCACCGCGTTCGTCGATCCGAGAGATGAAGATCTCCGATTCAGAGTTTTGAAGACGATCGATCGGATTAAGGAGGAAATCGTCCCGGATTATGCCGAATTATCGGAGATTTTCTCGCGGATTGATATTCGAGATTCGTCGAGTTGCAGAGAGGAAATCGAGAATCTCGAGGACGAAGTACAGAATCAAACGGATGAGAAATCGAGATCCGATGTGATGGCGTTGATCGGATTGGTTCGTTACGCGAAATGCGTGCTGTACGGTGCATCGACGCCGGAATCTGGATTCCGGCGGAAGGTTTCGATTTCCGATTTGGCTTTACCGGCGGATTTCAGGTGTCCGATTAGTCTGGATTTAATGCAGGACCCTGTCGTCGTGGCAACAGGACATACGTACGATCGTGCGGCGATTACGCTCTGGATTGAATCTGGGCACAACACGTGTCCCAAGACAGGTCAGACCCTGGCCCACACGAACCTAATTCCGAACCGGGCATTGAAAAATTTGATAGCGATGTGGTGCCGTCATGAGAGGGTTCCGTTCGACGTAACGGAAAGTAACAAAGAGCGAGTCAACGGCGTTACGTTCAACAAGGTGGCGTTGGAAGCCATGAGAATGACGGCGTCGTTTCTCGTTAACAAACTCGCCACGTCATCAGGTTCCGTAAACGACGCGAACGGCGTCGTTTACGAGCTTCGCGTTTTGGCCAAGACGGATTCCGGCAGCCGTGGATTCATCGCCCAAGCCGGAGCTCTGCCGTTGCTCGTCCGTTACCTGAACTCCGACGATCCGACGCTGCAAGTGAACGCCGTCACGACGGTGCTCAATCTCTCCATTTTCGAAGCGAACAAGACTCTGATTATGGAGACCGACGGCGCGTTGATCGGAGTGATTGAGGTGCTCCGGTCCGGCGCCACGTGGGAGGCGAAAGGGAACGCCGCCGCCACGATCTTCAGCCTCTCCAGTGTCTATAGTTACCGGCGGAGATTAGGGAGGAAGACACGTGTCATAAAGGGATTGCTGGATTTGGCCAAAGACGGGCCGATTAGTTCGAAGAGGGATGCTCTGGTGACGGTTCTGACATTGGCCGGTGATCGGGAGACCGTCGGGAGGTTAATTGAAGGTGGGGTTATGGAGACGGTGAGCCAGTTGATGAACAATCTGCCGGAGGAGGCGGTGACGATTCTGGAAGTGGTGGTGAGGAAAGGGGGAGTTATGGCGATTGCTTCGGGTTTTTTTGTGATTAAGAAATTGGGGGCGGTGTTGAGAGATGGCTCCGATAGGGCCAGAGAGAGCGCCGCGGCGGCGCTGGTGACAATGTGTCGGCAAGGAGGGTCGGAGATGGTTACGGAGCTGGCGTCGATTTCCGGGATCGAGAGAGTCATTTGGGAGCTGATGGGGAGTGGAACGATGAGGGGACGGCGGAAGGCAGCATCGCTGTTGAGAATTCTCCGGCGATGGGCGGCGGGTTTGGACGGAAATGGCGGCGTCGGTGGAGGAAACTCGACGACGGTCACTTCGTCGAGAATCGTCGGCGATTCCACCACCATTGTTAGTTCATCGAGAGGAGCAATTGTTAATAGCTAG 2073 53.45 MAVSPHSFPPRKRRPSAAAFVSPKFSGQILVQSLLCLCQEISAMKPLQFLLKRYSISMIRKSRLLEVFLEDLRRNRIVSLSASASLCLEEMYIVLQRIKTLIEDCSNGSKMWLLTQNESIANNFHELTLDLSTLLDIFPVKDAGLTEDVEELFYLLRNQCSESTAFVDPRDEDLRFRVLKTIDRIKEEIVPDYAELSEIFSRIDIRDSSSCREEIENLEDEVQNQTDEKSRSDVMALIGLVRYAKCVLYGASTPESGFRRKVSISDLALPADFRCPISLDLMQDPVVVATGHTYDRAAITLWIESGHNTCPKTGQTLAHTNLIPNRALKNLIAMWCRHERVPFDVTESNKERVNGVTFNKVALEAMRMTASFLVNKLATSSGSVNDANGVVYELRVLAKTDSGSRGFIAQAGALPLLVRYLNSDDPTLQVNAVTTVLNLSIFEANKTLIMETDGALIGVIEVLRSGATWEAKGNAAATIFSLSSVYSYRRRLGRKTRVIKGLLDLAKDGPISSKRDALVTVLTLAGDRETVGRLIEGGVMETVSQLMNNLPEEAVTILEVVVRKGGVMAIASGFFVIKKLGAVLRDGSDRARESAAAALVTMCRQGGSEMVTELASISGIERVIWELMGSGTMRGRRKAASLLRILRRWAAGLDGNGGVGGGNSTTVTSSRIVGDSTTIVSSSRGAIVNS 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 62785984 62788518 - Tan0006436.1 Tan03g0722 746226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0722 690 SUPERFAMILY ARM repeat 373 646 IPR016024 -
Tan03g0722 690 CDD RING-Ubox_PUB 270 322 IPR045210 -
Tan03g0722 690 SMART Ubox_2 272 335 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan03g0722 690 PANTHER U BOX DOMAIN-CONTAINING 52 650 - -
Tan03g0722 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 412 454 IPR000225 GO:0005515(InterPro)
Tan03g0722 690 Pfam Armadillo/beta-catenin-like repeat 405 440 IPR000225 GO:0005515(InterPro)
Tan03g0722 690 Gene3D - 50 140 IPR036537 GO:0007166(InterPro)
Tan03g0722 690 FunFam RING-type E3 ubiquitin transferase 268 342 - -
Tan03g0722 690 Gene3D - 369 646 IPR011989 -
Tan03g0722 690 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan03g0722 690 Coils Coil 208 235 - -
Tan03g0722 690 SUPERFAMILY RING/U-box 260 339 - -
Tan03g0722 690 Pfam U-box domain 270 339 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan03g0722 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 349 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0722 Tan-Chr3:62785984 Tan05g2530 Tan-Chr5:76649712 1.10E-119 dispersed
Tan03g0722 Tan-Chr3:62785984 Tan05g2026 Tan-Chr5:70391221 6.20E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0722 - - - 0.0