Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0754 ATGACGTCTGAGAATTCTAGTGGAGAAAAGACATCGAGAAAGAGGCGAAATGGAGGGTGTGTTTCTGTAGTGGACACTCTGAACAAGTGGAAGAAGTTGAACAATCAATTGGAAGAGGATTTGGCAAAAGATGGAGTAGAAGAAATTCGAAGAGTTCCAGCCAAGGGCTCCAAGAAGGGCTGCATGAGAGGGAAAGGAGGTCCTCAGAATTCAGATTGCAATTTCAGAGGAGTTAGACAGAGGACTTGGGGCAAGTGGGTGGCTGAAATTCGAGAGCCAATTGCTAGCAACAGCCGTGTGAAGAAGAAAGGCAGTCGTCTATGGCTTGGCACTTTCGCCACTGCTCACCAGGCTGCTGTGGCTTATGATGAAGCTGCCAAAGCCATGTATGGCCCTTTTGCTCGTCTCAATTTTCCTGACCCTTCATCTTCTTCTTCTCCTCCTCCTCTGAAACCAACCGCCACACAGCATTCTGATACAGTATCACCTGTTGCTTCTTCCTCTTCTTCTTCCTTCAATGGAGGACTATCTGCAGAGAAAGTGAACGGTTGTTATTCAATTTTAAAGCAAGAGAATTGTGAGTATGAATCGATGGAGGAACTGAAGGTGAAAGTGGAAGAAACAGCAAGCAGTAGAGTCAATTTCAGTTATACAGATGCTAAACCCAATTCATTTTATGATTCTAACATTGGGAACAAATTAACACAAGGAGATATCAAGGAAGGATTAGCTGATGTTACAAGACGCCAGGATCAGAATGATCCTTCTGAGTTTAGTTTCGAATTTGAAGCTATGGATACAAATGGTTTTAACAATTGCAATAAATATGTGATACAGAAGCTTCAGAGTGATCCATATGCAAGAACTTACTGGATACCGGAATGGGAGATCGGCGATCTCGGGTCGCCAATGGTGATGGAAGATAAGCCGACAGAGATGGAGAGCTATGGAGACTGTATGGCCTTCAACCGTGATCTGAGTTTGTTGCTAGATCGGCAAAAACACATGGGAGTTGGAGACCAGAGGGTTGATGATTGTAACAACTTTGAGTTTTTGAGGCCTGATTATGATTTTGGGTTGGAGGAGGAACGAAAGTGGCTTGATTTATGCTTCCATGGATGA 1122 43.85 MTSENSSGEKTSRKRRNGGCVSVVDTLNKWKKLNNQLEEDLAKDGVEEIRRVPAKGSKKGCMRGKGGPQNSDCNFRGVRQRTWGKWVAEIREPIASNSRVKKKGSRLWLGTFATAHQAAVAYDEAAKAMYGPFARLNFPDPSSSSSPPPLKPTATQHSDTVSPVASSSSSSFNGGLSAEKVNGCYSILKQENCEYESMEELKVKVEETASSRVNFSYTDAKPNSFYDSNIGNKLTQGDIKEGLADVTRRQDQNDPSEFSFEFEAMDTNGFNNCNKYVIQKLQSDPYARTYWIPEWEIGDLGSPMVMEDKPTEMESYGDCMAFNRDLSLLLDRQKHMGVGDQRVDDCNNFEFLRPDYDFGLEEERKWLDLCFHG 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 63470986 63472316 + Tan0001286.1 Tan03g0754 746258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0754 373 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g0754 373 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g0754 373 FunFam Ethylene-responsive transcription factor 2 73 140 - -
Tan03g0754 373 Pfam AP2 domain 74 131 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g0754 373 MobiDBLite consensus disorder prediction 149 173 - -
Tan03g0754 373 SMART rav1_2 74 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g0754 373 SUPERFAMILY DNA-binding domain 74 140 IPR016177 GO:0003677(InterPro)
Tan03g0754 373 CDD AP2 73 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g0754 373 Gene3D AP2/ERF domain 74 140 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g0754 373 MobiDBLite consensus disorder prediction 140 173 - -
Tan03g0754 373 Coils Coil 188 208 - -
Tan03g0754 373 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 8 267 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Tan03g0754 373 ProSiteProfiles AP2/ERF domain profile. 74 139 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0754 Tan-Chr3:63470986 Tan05g0842 Tan-Chr5:6576367 3.60E-37 dispersed
Tan03g0754 Tan-Chr3:63470986 Tan01g4974 Tan-Chr1:115526265 2.00E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26917 PF00847 AP2 1.60E-13 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0754 - - - 0.0