Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0788 ATGGCTTCCCAAACAGAGCCTTGGCTACTGGAAAACGGCAGCGTTAAGCGCTTAACCAAAGAGAATCGACAAGGCCATGGCCGAAGCCGAACAGCCCACAACATGTCGTCCTCTTCCCTCCGCAGAAAGTCCGATTTAACCCTCGTCTCCAAAATCCAATTCGGCTGCCTCAGGAACTTCCTCGCCAATCTTCAGGAGGTCATTTTGGGAACTAAACTTTCCATTCTCTTCCCTGCGATTCCGCTCGCTATTGTGGCTCAGAGTTTTCGCTTCGGAAGACCTTGGATTTTTGCATTGAGCTTGCTTGGCCTCACGCCATTGGCTGAACGTGTCAGCTTTCTGACAGAGCAAATCGCTTATTTCACTGGTCCAACAGTTGGAGGACTTTTGAATGCAACATGTGGAAATGCAACGGAGCTGATAATTGCAATTCTTGCACTTACACAAGGAAAGATAGACGTGGTGAAGTATTCTCTTTTGGGTTCTGTTCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCTCTCTTCTGTGGTGGCATTGCAAATCTCAGAAAGGAACAAAATTATGACAGAAGACAAGCCGATGTCAACGCACTGATGCTGATGCTTTCTTTGCTGTGCCATTTATTGCCGTTATTATTTGGCTACGCCGCCTCCTCCGCCGTCACAGCCGCCGCCTCCACCCTCCACCTTTCCAGAGCCAGCAGCATCGTAATGCTCTCTGCTTACATTGCTTACTTGGTCTTCCAACTCTGGACTCATCGGCAATTATTTGAAGCTGAGGAGGGTGAAGACGACGACGTTCCTGGAGAAGAGGCAGTGATTGGATTCTGGAGTGCATTTGCATGGCTTGTAGGAATGACACTCCTTATTGCTTTGCTATCCGAATACGTAGTCAACACAATTGAGGAAGCATCAACTACTTGGGGTTTGTCTGTGAGTTTCCTTAGCATAATCTTGCTCCCTATCGTCGGAAATGCAGCCGAACACGCAGGAGCTATCATATTTGCCTTCAAGAATAAGTTGGACATATCTCTGGGGGTTGCGTTGGGATCTGCAACACAAATTGCACTGTTTGTGATTCCACTGTGTGTGATTGTTGCTTGGGCAATGGGAGTGGACATGGATCTGAATTTCAATCTCATGGAAACGGGCTCGCTTGGATTGGCCATTATTGCCACAGCCTTCACTTTACAAGATGGAACCTCTCACTATATTAAAGGGCTTATTCTTCTGCTATGCTACATTATCATTGCTGCTTGCTTCTTTGTCTCCAAGACACAAGAAGATGGTAACAATACCCCCAACTTGGGAATCCAATCTTCAAACCAAGCAATCTTCAGAGCCTAA 1350 46.67 MASQTEPWLLENGSVKRLTKENRQGHGRSRTAHNMSSSSLRRKSDLTLVSKIQFGCLRNFLANLQEVILGTKLSILFPAIPLAIVAQSFRFGRPWIFALSLLGLTPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATELIIAILALTQGKIDVVKYSLLGSVLSNLLLVLGTSLFCGGIANLRKEQNYDRRQADVNALMLMLSLLCHLLPLLFGYAASSAVTAAASTLHLSRASSIVMLSAYIAYLVFQLWTHRQLFEAEEGEDDDVPGEEAVIGFWSAFAWLVGMTLLIALLSEYVVNTIEEASTTWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIALFVIPLCVIVAWAMGVDMDLNFNLMETGSLGLAIIATAFTLQDGTSHYIKGLILLLCYIIIAACFFVSKTQEDGNNTPNLGIQSSNQAIFRA 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 64009293 64016452 + Tan0002606.1 Tan03g0788 746292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0788 449 Pfam Sodium/calcium exchanger protein 280 423 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g0788 449 Pfam Sodium/calcium exchanger protein 95 252 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g0788 449 FunFam Vacuolar cation/proton exchanger 269 424 - -
Tan03g0788 449 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 20 427 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Tan03g0788 449 MobiDBLite consensus disorder prediction 19 39 - -
Tan03g0788 449 FunFam Vacuolar cation/proton exchanger 124 268 - -
Tan03g0788 449 Gene3D - 124 272 IPR044880 -
Tan03g0788 449 Gene3D - 273 424 IPR044880 -
Tan03g0788 449 NCBIfam calcium/proton exchanger 78 423 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0788 Tan-Chr3:64009293 Tan05g1001 Tan-Chr5:8413889 7.80E-95 dispersed
Tan01g1872 Tan-Chr1:20010468 Tan03g0788 Tan-Chr3:64009293 2.90E-93 transposed
Tan04g2826 Tan-Chr4:87707625 Tan03g0788 Tan-Chr3:64009293 1.20E-81 transposed
Tan08g2346 Tan-Chr8:74749066 Tan03g0788 Tan-Chr3:64009293 5.60E-127 transposed
Tan03g0788 Tan-Chr3:64009293 Tan08g2132 Tan-Chr8:73125304 4.20E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0788 K07300 - csv:101213857 766.533