Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan03g0788 | ATGGCTTCCCAAACAGAGCCTTGGCTACTGGAAAACGGCAGCGTTAAGCGCTTAACCAAAGAGAATCGACAAGGCCATGGCCGAAGCCGAACAGCCCACAACATGTCGTCCTCTTCCCTCCGCAGAAAGTCCGATTTAACCCTCGTCTCCAAAATCCAATTCGGCTGCCTCAGGAACTTCCTCGCCAATCTTCAGGAGGTCATTTTGGGAACTAAACTTTCCATTCTCTTCCCTGCGATTCCGCTCGCTATTGTGGCTCAGAGTTTTCGCTTCGGAAGACCTTGGATTTTTGCATTGAGCTTGCTTGGCCTCACGCCATTGGCTGAACGTGTCAGCTTTCTGACAGAGCAAATCGCTTATTTCACTGGTCCAACAGTTGGAGGACTTTTGAATGCAACATGTGGAAATGCAACGGAGCTGATAATTGCAATTCTTGCACTTACACAAGGAAAGATAGACGTGGTGAAGTATTCTCTTTTGGGTTCTGTTCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCTCTCTTCTGTGGTGGCATTGCAAATCTCAGAAAGGAACAAAATTATGACAGAAGACAAGCCGATGTCAACGCACTGATGCTGATGCTTTCTTTGCTGTGCCATTTATTGCCGTTATTATTTGGCTACGCCGCCTCCTCCGCCGTCACAGCCGCCGCCTCCACCCTCCACCTTTCCAGAGCCAGCAGCATCGTAATGCTCTCTGCTTACATTGCTTACTTGGTCTTCCAACTCTGGACTCATCGGCAATTATTTGAAGCTGAGGAGGGTGAAGACGACGACGTTCCTGGAGAAGAGGCAGTGATTGGATTCTGGAGTGCATTTGCATGGCTTGTAGGAATGACACTCCTTATTGCTTTGCTATCCGAATACGTAGTCAACACAATTGAGGAAGCATCAACTACTTGGGGTTTGTCTGTGAGTTTCCTTAGCATAATCTTGCTCCCTATCGTCGGAAATGCAGCCGAACACGCAGGAGCTATCATATTTGCCTTCAAGAATAAGTTGGACATATCTCTGGGGGTTGCGTTGGGATCTGCAACACAAATTGCACTGTTTGTGATTCCACTGTGTGTGATTGTTGCTTGGGCAATGGGAGTGGACATGGATCTGAATTTCAATCTCATGGAAACGGGCTCGCTTGGATTGGCCATTATTGCCACAGCCTTCACTTTACAAGATGGAACCTCTCACTATATTAAAGGGCTTATTCTTCTGCTATGCTACATTATCATTGCTGCTTGCTTCTTTGTCTCCAAGACACAAGAAGATGGTAACAATACCCCCAACTTGGGAATCCAATCTTCAAACCAAGCAATCTTCAGAGCCTAA | 1350 | 46.67 | MASQTEPWLLENGSVKRLTKENRQGHGRSRTAHNMSSSSLRRKSDLTLVSKIQFGCLRNFLANLQEVILGTKLSILFPAIPLAIVAQSFRFGRPWIFALSLLGLTPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATELIIAILALTQGKIDVVKYSLLGSVLSNLLLVLGTSLFCGGIANLRKEQNYDRRQADVNALMLMLSLLCHLLPLLFGYAASSAVTAAASTLHLSRASSIVMLSAYIAYLVFQLWTHRQLFEAEEGEDDDVPGEEAVIGFWSAFAWLVGMTLLIALLSEYVVNTIEEASTTWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIALFVIPLCVIVAWAMGVDMDLNFNLMETGSLGLAIIATAFTLQDGTSHYIKGLILLLCYIIIAACFFVSKTQEDGNNTPNLGIQSSNQAIFRA | 449 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 64009293 | 64016452 | + | Tan0002606.1 | Tan03g0788 | 746292 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan03g0788 | 449 | Pfam | Sodium/calcium exchanger protein | 280 | 423 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Tan03g0788 | 449 | Pfam | Sodium/calcium exchanger protein | 95 | 252 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Tan03g0788 | 449 | FunFam | Vacuolar cation/proton exchanger | 269 | 424 | - | - | |
Tan03g0788 | 449 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 20 | 427 | IPR004713 | GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER) | |
Tan03g0788 | 449 | MobiDBLite | consensus disorder prediction | 19 | 39 | - | - | |
Tan03g0788 | 449 | FunFam | Vacuolar cation/proton exchanger | 124 | 268 | - | - | |
Tan03g0788 | 449 | Gene3D | - | 124 | 272 | IPR044880 | - | |
Tan03g0788 | 449 | Gene3D | - | 273 | 424 | IPR044880 | - | |
Tan03g0788 | 449 | NCBIfam | calcium/proton exchanger | 78 | 423 | IPR004798 | GO:0006816(InterPro)|GO:0015369(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan03g0788 | Tan-Chr3:64009293 | Tan05g1001 | Tan-Chr5:8413889 | 7.80E-95 | dispersed | |
Tan01g1872 | Tan-Chr1:20010468 | Tan03g0788 | Tan-Chr3:64009293 | 2.90E-93 | transposed | |
Tan04g2826 | Tan-Chr4:87707625 | Tan03g0788 | Tan-Chr3:64009293 | 1.20E-81 | transposed | |
Tan08g2346 | Tan-Chr8:74749066 | Tan03g0788 | Tan-Chr3:64009293 | 5.60E-127 | transposed | |
Tan03g0788 | Tan-Chr3:64009293 | Tan08g2132 | Tan-Chr8:73125304 | 4.20E-165 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan03g0788 | K07300 | - | csv:101213857 | 766.533 |