Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0855 ATGGCGGCTTTGGAGACGGCCGGAGCTGATTTGGAGGAAGGCGGCGGACGGCGAAGTGGGGTTGGTGAAGTGAAGGAGAGAGATTGTAGGATTTGCCATTTGGGGTTGGAGAGTAACAGCAATGAGTGTGGAATTGCAATTGAATTAGGCTGTTCTTGTAAGAATGATTTGGCTGCTGCCCACAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGACGTGTGAGATATGTCATTCTGTTGTGAAAAATGTCGTTGGAGCACACGAACTCGAACAAACGGAGCAGCTCCATGAGTCGAACAATGGGACGGTATCGACAGCGATGGTTGCAGCGTCGGTGGCTGCCGCTCCTGGAGGTGGCCGGAGCTTTTGGCAGGTTCACCGGGTACTGAATTTTCTTCTTGCTTGTATGGTATTTGCTTTTGTTATATCTTGGCTGTTTCATTTCAATGTGCCATCATAA 471 48.83 MAALETAGADLEEGGGRRSGVGEVKERDCRICHLGLESNSNECGIAIELGCSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSVVKNVVGAHELEQTEQLHESNNGTVSTAMVAASVAAAPGGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 64748740 64749983 + Tan0018390.1 Tan03g0855 746359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0855 156 MobiDBLite consensus disorder prediction 1 21 - -
Tan03g0855 156 SUPERFAMILY RING/U-box 23 84 - -
Tan03g0855 156 ProSiteProfiles Zinc finger RING-CH-type profile. 21 87 IPR011016 GO:0008270(InterPro)
Tan03g0855 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 90 IPR013083 -
Tan03g0855 156 PANTHER ZINC FINGER, RING-CH-TYPE 9 155 - -
Tan03g0855 156 SMART ringv_2 28 81 IPR011016 GO:0008270(InterPro)
Tan03g0855 156 Pfam RING-variant domain 29 80 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0855 Tan-Chr3:64748740 Tan08g2306 Tan-Chr8:74412886 6.40E-28 dispersed
Tan11g0240 Tan-Chr11:1928095 Tan03g0855 Tan-Chr3:64748740 7.20E-46 wgd
Tan03g0855 Tan-Chr3:64748740 Tan08g2063 Tan-Chr8:72723039 1.70E-49 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0855 - - - 0.0