Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0878 ATGGGGGAACAACTGCAGGTTTTTGGTCTCTGGTCAAGTCCCTATAGTCGCAGAGTGGAGCTGGCTCTGAAACTCAAAGGCGTCGAATACCAATACATTGAGGAAGATGTGCTGAACAACAAGAAGAGCGATTTGCTTCTCAAATACAACCCAATCTACAAGAAAGTGCCTGTCCTCGTCCACTATGGAAAACCCATTTCAGAGTCTCTTGTCATCCTTGAATACATCGATGAAAAATGGAGACAAAACCCTATCTTGCCCCAAGATCCCCATGAAAGGGCTCTTGCCAGGTTCTGGTCTACGTATATCGATGGCAAGGTTGCGCCTGCTGTACAAAAAGCTGGTCGAAGTAAAGGAGAAGAGATGGAGAAAGCTGTAGAAGAAGTGCTGGAGGCGTTAGAACCACTTGAGAATGAGCTTAAAGGCAAAGGCAAGAAGTTCTTCGGAGGAGAGAGAATTGGGTTTTTGGACATTGTTGGCATCATCGTAGCCTACTGGTTTCCTGCCATTGAAGAAGCTTTAGGGATTGAGTTGCTTAGAACTCATAAATTTCCAAACCTAAGACAATGGAGTGAAGAACTTTCGAACCACAACGTGGTGAAGGAGGTTCTCCCTCAAAAGGATGAGCTCGTTGCCTGTTTTCAAGCTATTTTTCGAAAAAACTAG 666 44.74 MGEQLQVFGLWSSPYSRRVELALKLKGVEYQYIEEDVLNNKKSDLLLKYNPIYKKVPVLVHYGKPISESLVILEYIDEKWRQNPILPQDPHERALARFWSTYIDGKVAPAVQKAGRSKGEEMEKAVEEVLEALEPLENELKGKGKKFFGGERIGFLDIVGIIVAYWFPAIEEALGIELLRTHKFPNLRQWSEELSNHNVVKEVLPQKDELVACFQAIFRKN 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 64978901 64980072 - Tan0016084.1 Tan03g0878 746382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0878 221 SUPERFAMILY Thioredoxin-like 5 107 IPR036249 -
Tan03g0878 221 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 5 215 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Tan03g0878 221 FunFam Tau class glutathione S-transferase 86 221 - -
Tan03g0878 221 Gene3D - 86 221 - -
Tan03g0878 221 FunFam Tau class glutathione S-transferase 1 88 - -
Tan03g0878 221 Pfam Glutathione S-transferase, N-terminal domain 4 78 IPR004045 -
Tan03g0878 221 Coils Coil 119 139 - -
Tan03g0878 221 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 84 IPR004045 -
Tan03g0878 221 Gene3D Glutaredoxin 1 85 - -
Tan03g0878 221 Pfam Glutathione S-transferase, C-terminal domain 98 197 IPR004046 -
Tan03g0878 221 CDD GST_C_Tau 90 217 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Tan03g0878 221 CDD GST_N_Tau 5 80 - -
Tan03g0878 221 SFLD Glutathione Transferase (cytosolic) 2 219 IPR040079 -
Tan03g0878 221 SFLD Main.3: Omega- and Tau-like 2 219 IPR045073 -
Tan03g0878 221 SUPERFAMILY GST C-terminal domain-like 78 219 IPR036282 -
Tan03g0878 221 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 214 IPR010987 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0862 Tan-Chr3:64824977 Tan03g0878 Tan-Chr3:64978901 6.10E-48 dispersed
Tan03g0878 Tan-Chr3:64978901 Tan10g0407 Tan-Chr10:3273542 7.60E-59 dispersed
Tan03g0877 Tan-Chr3:64971320 Tan03g0878 Tan-Chr3:64978901 4.80E-90 tandem
Tan03g0878 Tan-Chr3:64978901 Tan03g0879 Tan-Chr3:64986299 3.20E-73 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0878 K00799 - csv:105434443 280.026