Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0913 ATGGCTTCGTGCCGCTTAAATCTTCCTCACCGGTGTTCTCCCGGAACGCCGCGCTTTGGCCCCACTTGCTCCCTCCAAAACCCTAATCCTCCTCCTCAATTACTTGCTCATTTTCCATCTTCTCTCCTCAATTCCAATAAGTTATCATATTCCAGAATCCAGCCCCGAAGATTTATTGCCATGAAAGCTCACATGGCGACAGAAGAAGCAAAGCCTGTTTCAGAGGATAGAATGCTTGTTTTTGTTCCGCCTCATCCGTTGATCAAGCACTGGGTTTCAGTTTTGAGGAATGAACAAACTCCTTGCCCCATTTTTAAAAATGCAATGGCAGAGCTAGGGAGGCTACTTATTTATGAAGCTTCAAGGGATTGGCTGCCTACTGTAACAGGGGAGATACAGTCACCCATGGGTGTTGCTTCAGTTGAATTTATCGACCCAAGAGAGCCTGTGGCGATAATTCCCATCCTCAGAGCTGGCTTAGCTCTTGCAGAATACGCATCATCTATATTGCCTGCAACAAAAATGTACCATCTCGGGATAAGCAGGGACGAGGAGACTCTTCAGCCAACTGTATATCTTAACAAGTTACCTGAAAATTTTCCTGAAGGTTCTCGAATCTTTGTGGTTGATCCAATGCTTGCAACCGGTGGCACAATAGTGGCAGCTCTTGATCTCCTAAAGGAACGTGGAATTGGCAACAAGCAAATAAAAGTGATATCTGCTGTTGCTGCCCCTCCAGCCCTTCAAAAGCTCAGCGAGAAGTTTCCAGGGCTTCACGTATACACCGGAATTATTGACCCGACTGTTAATGACAAAGGGTTTGTTATTGTTACCACATGA 840 45.71 MASCRLNLPHRCSPGTPRFGPTCSLQNPNPPPQLLAHFPSSLLNSNKLSYSRIQPRRFIAMKAHMATEEAKPVSEDRMLVFVPPHPLIKHWVSVLRNEQTPCPIFKNAMAELGRLLIYEASRDWLPTVTGEIQSPMGVASVEFIDPREPVAIIPILRAGLALAEYASSILPATKMYHLGISRDEETLQPTVYLNKLPENFPEGSRIFVVDPMLATGGTIVAALDLLKERGIGNKQIKVISAVAAPPALQKLSEKFPGLHVYTGIIDPTVNDKGFVIVTT 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 65376645 65381216 - Tan0019351.3 Tan03g0913 746417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0913 279 FunFam Uracil phosphoribosyltransferase 78 278 - -
Tan03g0913 279 CDD PRTases_typeI 145 265 IPR000836 -
Tan03g0913 279 Gene3D - 70 278 IPR029057 -
Tan03g0913 279 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 81 266 IPR050054 -
Tan03g0913 279 SUPERFAMILY PRTase-like 80 275 IPR029057 -
Tan03g0913 279 Pfam Uracil phosphoribosyltransferase 82 276 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0913 K00761 - - csv:101209447 476.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0911 Tan-Chr3:65376645 Tan03g0913 Tan-Chr3:65376645 1.10E-158 dispersed
Tan03g0912 Tan-Chr3:65376645 Tan03g0913 Tan-Chr3:65376645 5.20E-136 tandem
Tan03g0913 Tan-Chr3:65376645 Tan03g0914 Tan-Chr3:65376645 3.30E-136 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g796 . . . . . Bpe03g01028 . . . . Cma03g00404 . Car03g00353 . Sed14g0515 Cpe10g00910 . Bhi03g02043 Tan03g0913 Cmetu08g1944 . . . . Cla04g00768 Cam04g0797 Cec04g0921 Cco04g0972 Clacu04g0832 Cmu04g0825 Cre04g0882 . . Cone13ag1356 Cone19ag1352 Lsi01g01465 Csa04g01535 Chy08g00711 . Blo07g01168 . . Bda05g00954 . . . . . Cmo03g00417 . . . . . . . . . . . . . . . . . . . . . . . . Cme08g02442
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g2731 . 33 188 PRT Gene Family AT1G80050 79.5 1.0e-65 246.9
Tan07g1842 . 30 180 PRT Gene Family AT1G80050 74.8 1.6e-61 233.0
Tan01g2010 . 30 180 PRT Gene Family AT1G80050 74.8 1.3e-60 229.9
Tan07g1841 . 30 170 PRT Gene Family AT1G80050 75.2 1.8e-57 219.5
Tan02g1742 . 30 179 PRT Gene Family AT1G80050 69.3 1.8e-54 209.5
Tan02g1743 . 103 252 PRT Gene Family AT1G80050 69.3 1.8e-54 209.5
Tan02g2731 . 1 148 PRT Gene Family AT5G11160 81.1 6.0e-64 241.1
Tan07g1841 . 8 145 PRT Gene Family AT5G11160 76.1 7.8e-56 214.2
Tan07g1842 . 8 145 PRT Gene Family AT5G11160 76.1 7.8e-56 214.2
Tan02g1742 . 8 145 PRT Gene Family AT5G11160 71.7 1.6e-53 206.5
Tan02g1743 . 81 218 PRT Gene Family AT5G11160 71.7 1.6e-53 206.5
Tan01g2010 . 8 145 PRT Gene Family AT5G11160 71.7 4.0e-52 201.8
Tan02g1742 . 1 182 PRT Gene Family AT1G27450 83.0 3.4e-81 298.5
Tan02g1743 . 74 255 PRT Gene Family AT1G27450 83.0 3.4e-81 298.5
Tan07g1842 . 7 180 PRT Gene Family AT1G27450 74.7 1.3e-72 270.0
Tan01g2010 . 7 180 PRT Gene Family AT1G27450 73.0 9.4e-71 263.8
Tan07g1841 . 7 172 PRT Gene Family AT1G27450 74.7 4.7e-70 261.5
Tan02g2731 . 11 183 PRT Gene Family AT1G27450 68.8 5.3e-66 248.1
Tan05g1228 . 65 551 PRT Gene Family AT2G16570 84.0 5.9e-241 830.9
Tan05g1228 . 71 551 PRT Gene Family AT4G34740 84.9 1.1e-239 826.6
Tan05g1228 . 71 524 PRT Gene Family AT4G38880 75.2 5.0e-197 684.9
Tan02g1742 . 1 182 PRT Gene Family AT1G27450 83.0 3.4e-81 298.5
Tan02g1743 . 74 255 PRT Gene Family AT1G27450 83.0 3.4e-81 298.5
Tan07g1842 . 7 180 PRT Gene Family AT1G27450 74.7 1.3e-72 270.0
Tan01g2010 . 7 180 PRT Gene Family AT1G27450 73.0 9.4e-71 263.8
Tan07g1841 . 7 172 PRT Gene Family AT1G27450 74.7 4.7e-70 261.5
Tan02g2731 . 11 183 PRT Gene Family AT1G27450 68.8 5.3e-66 248.1
Tan02g2731 . 33 188 PRT Gene Family AT1G80050 79.5 1.0e-65 246.9
Tan07g1842 . 30 180 PRT Gene Family AT1G80050 74.8 1.6e-61 233.0
Tan01g2010 . 30 180 PRT Gene Family AT1G80050 74.8 1.3e-60 229.9
Tan07g1841 . 30 170 PRT Gene Family AT1G80050 75.2 1.8e-57 219.5
Tan02g1742 . 30 179 PRT Gene Family AT1G80050 69.3 1.8e-54 209.5
Tan02g1743 . 103 252 PRT Gene Family AT1G80050 69.3 1.8e-54 209.5
Tan07g1841 . 5 97 PRT Gene Family AT4G22570 84.9 2.8e-43 171.8
Tan07g1842 . 5 97 PRT Gene Family AT4G22570 84.9 2.8e-43 171.8
Tan01g2010 . 5 97 PRT Gene Family AT4G22570 84.9 8.2e-43 170.2
Tan02g1742 . 5 97 PRT Gene Family AT4G22570 80.6 2.5e-39 158.7
Tan02g1743 . 78 170 PRT Gene Family AT4G22570 80.6 2.5e-39 158.7
Tan02g2731 . 11 100 PRT Gene Family AT4G22570 78.9 3.0e-37 151.8
Tan07g1841 . 1 96 PRT Gene Family AT4G12440 83.3 1.6e-40 162.5
Tan07g1842 . 1 96 PRT Gene Family AT4G12440 83.3 1.6e-40 162.5
Tan01g2010 . 1 96 PRT Gene Family AT4G12440 82.3 1.3e-39 159.5
Tan02g1742 . 1 96 PRT Gene Family AT4G12440 78.1 4.7e-37 151.0
Tan02g1743 . 74 169 PRT Gene Family AT4G12440 78.1 4.7e-37 151.0
Tan02g2731 . 4 99 PRT Gene Family AT4G12440 78.1 4.7e-37 151.0
Tan02g2731 . 1 148 PRT Gene Family AT5G11160 81.1 6.0e-64 241.1
Tan07g1841 . 8 145 PRT Gene Family AT5G11160 76.1 7.8e-56 214.2
Tan07g1842 . 8 145 PRT Gene Family AT5G11160 76.1 7.8e-56 214.2
Tan02g1742 . 8 145 PRT Gene Family AT5G11160 71.7 1.6e-53 206.5
Tan02g1743 . 81 218 PRT Gene Family AT5G11160 71.7 1.6e-53 206.5
Tan01g2010 . 8 145 PRT Gene Family AT5G11160 71.7 4.0e-52 201.8
Tan11g1087 . 1 186 PRT Gene Family AT1G71750 67.0 2.1e-71 266.2
Tan01g3234 . 16 469 PRT Gene Family AT1G55810 85.5 1.9e-226 782.3
Tan07g0116 . 19 482 PRT Gene Family AT1G55810 74.6 4.3e-202 701.4
Tan04g1998 . 19 482 PRT Gene Family AT1G55810 73.1 2.6e-199 692.2
Tan01g3234 . 66 468 PRT Gene Family AT3G27440 77.4 5.8e-185 644.4
Tan07g0116 . 80 482 PRT Gene Family AT3G27440 75.4 1.5e-180 629.8
Tan04g1998 . 80 482 PRT Gene Family AT3G27440 74.7 9.0e-178 620.5
Tan07g0116 . 1 482 PRT Gene Family AT3G27190 87.0 1.7e-249 859.0
Tan04g1998 . 1 482 PRT Gene Family AT3G27190 84.9 2.9e-244 841.6
Tan01g3234 . 3 468 PRT Gene Family AT3G27190 74.6 1.3e-209 726.5
Tan03g0911 . 3 289 PRT Gene Family AT3G53900 68.3 1.3e-109 393.7
Tan03g0913 . 3 276 PRT Gene Family AT3G53900 66.4 8.3e-101 364.4
Tan03g0912 . 3 238 PRT Gene Family AT3G53900 64.9 3.9e-82 302.4
Tan03g0914 . 3 238 PRT Gene Family AT3G53900 64.9 3.9e-82 302.4
Tan01g3234 . 1 469 PRT Gene Family AT4G26510 84.3 1.5e-234 809.3
Tan07g0116 . 7 482 PRT Gene Family AT4G26510 76.1 1.5e-213 739.6
Tan04g1998 . 11 482 PRT Gene Family AT4G26510 74.4 2.5e-208 722.2
Tan07g0116 . 1 482 PRT Gene Family AT5G40870 87.2 7.9e-250 860.1
Tan04g1998 . 1 482 PRT Gene Family AT5G40870 85.1 9.3e-243 836.6
Tan01g3234 . 3 471 PRT Gene Family AT5G40870 73.7 2.0e-208 722.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005664 1 4 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 39