Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0945 ATGCCTTCTCTCGCCCTCCTCTGCATTTTTGCCTCTCTCTCTTCACTCTTCCTCCTCTCTCATGCCAGAATCCCCGGTATCTACTCCGGCGGCCCCTGGCAGGACGCTCACGCCACCTTCTACGGCGGAAGCGACGCCTCCGGAACCATGGGTGGTGCTTGTGGGTATGGGAATCTCTACAGCCAGGGCTATGGCGTCAACACGGCCGCGCTGAGTACTGCTCTGTTCAACAATGGCTTTAGCTGCGGTGCTTGCTTTGAGATCAAGTGTGCTAATGATCCCAAATGGTGCCATCCGGGTAGCCCTTCCATTTTCATTACGGCTACCAATTTCTGTCCCCCGAATTTTGCTCTTCCTAACGACAATGGCGGCTGGTGTAATCCTCCTCGCACTCATTTCGATCTCGCCATGCCTATGTTCCTCAAGATCGCCGAATACCGCGCTGGAATCGTCCCCGTCGCTTACCGCCGGGTGCCATGTAAGAAACAAGGGGGAATCCGGTTCACAATAAACGGTTTCCGTTACTTCAACTTGGTTTTAATCACCAACGTCGCGGGTGCAGGGGATATCGTGAGGGTGAGCGTGAAAGGCTCAAACACCGGCTGGATGAGCATGAGCCGAAACTGGGGGCAAAATTGGCAATCCAATGCGGTTTTGGTGGGCCAGTCCCTCTCCTTCCGGGTCACGGGCAGTGACCGTCGTACGTCAACTTCATGGAACGTGGCACCTTCTAATTGGCAGTTCGGTCAGACCTTCACGGGAAAGAATTTCCGCGTCTGA 780 54.87 MPSLALLCIFASLSSLFLLSHARIPGIYSGGPWQDAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCANDPKWCHPGSPSIFITATNFCPPNFALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVAYRRVPCKKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTGWMSMSRNWGQNWQSNAVLVGQSLSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 65909605 65911671 + Tan0014057.1 Tan03g0945 746449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0945 259 FunFam Expansin 22 161 - -
Tan03g0945 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664(InterPro)
Tan03g0945 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664(InterPro)
Tan03g0945 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664(InterPro)
Tan03g0945 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664(InterPro)
Tan03g0945 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664(InterPro)
Tan03g0945 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664(InterPro)
Tan03g0945 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664(InterPro)
Tan03g0945 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664(InterPro)
Tan03g0945 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664(InterPro)
Tan03g0945 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Tan03g0945 259 CDD DPBB_EXPA_N 32 160 - -
Tan03g0945 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Tan03g0945 259 PANTHER EXPANSIN-A15 15 257 IPR002963 GO:0009664(InterPro)
Tan03g0945 259 Gene3D - 165 257 IPR036749 -
Tan03g0945 259 SMART dpbb_1 68 155 IPR007112 -
Tan03g0945 259 Gene3D - 22 161 IPR036908 -
Tan03g0945 259 FunFam Expansin 165 257 - -
Tan03g0945 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Tan03g0945 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Tan03g0945 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Tan03g0945 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Tan03g0945 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576(InterPro)
Tan03g0945 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576(InterPro)
Tan03g0945 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576(InterPro)
Tan03g0945 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576(InterPro)
Tan03g0945 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576(InterPro)
Tan03g0945 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1950 Tan-Chr1:21473742 Tan03g0945 Tan-Chr3:65909605 7.90E-79 dispersed
Tan03g0945 Tan-Chr3:65909605 Tan04g1418 Tan-Chr4:16418460 2.20E-105 dispersed
Tan03g0945 Tan-Chr3:65909605 Tan03g0946 Tan-Chr3:65909605 3.10E-152 tandem
Tan01g2437 Tan-Chr1:30691827 Tan03g0945 Tan-Chr3:65909605 3.80E-134 wgd
Tan11g0699 Tan-Chr11:6079714 Tan03g0945 Tan-Chr3:65909605 4.90E-121 wgd
Tan03g0945 Tan-Chr3:65909605 Tan04g0284 Tan-Chr4:2328711 7.60E-135 wgd
Tan03g0945 Tan-Chr3:65909605 Tan05g0412 Tan-Chr5:2890306 4.60E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0945 - - - 0.0